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Job DescriptionP52044
Confidence71.03%DateThu Jan 5 12:04:58 GMT 2012
Rank248Aligned Residues195
% Identity9%Templatec3tqwA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:methionine-binding protein; PDBTitle: structure of a abc transporter, periplasmic substrate-binding protein2 from coxiella burnetii
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   95....100.........110.........120........ .130.........140.........150.........160.........170...
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Query Sequence  IVIGIDNTYPTIIFDQLISLGDKYEGVTAQPVEF. SENGVIDNLFDRQLDFIISPQHVSARVQELENLTISELPPLRLGF
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Template Sequence  VRVGTIAGPETQLXEVAKQVALNRYGLHVNIITFSDYNTPNEALADGSVDANXFQHLPYLKAQI. . EXRGYKIVSIGKTF
Template Known Secondary structure  TT


S
TTSTTS
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   2.......10.........20.........30.........40.........50.........60..... ....70.........
 
   174.....180.........190.........200.........210......... 220.........230......
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Query Sequence  LVSRRYEERQEQELLQELPWLQMRFQNRANFEAMIDANMRPCGINP. . . . . . . . . . . . . . . . . TIIYRPYSFMAKISAVE
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Template Sequence  VYPXGLYSKKITALTQLKTGAKIAVPSDPSNEARALLLLEKAQLIQLKTHINATPXDIASNPKKLKIVELDAAQLSRSLG
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SS
SSGGG

TT

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GGG
TT


GGGGGG
TT
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   80.........90.........100.........110.........120.........130.........140.........150.........
 
   237..240.........250.........260.........270.........280.........290.
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Query Sequence  RGHFLTVIPHFAWRLVNPATLKYFDAPHRPMYMQEYLYSIRNHRYTATMLQHIAE
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Template Sequence  DVDLAAINTNYAIPAGLSPSRDALLTEGPNSPYANVVAVREDDKNDPRLKQLVSA
Template Known Secondary structure  T
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GGGT

TTTT
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GGGTT
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   162.......170.........180.........190.........200.........210......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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