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Job DescriptionP52044
Confidence100.00%DateThu Jan 5 12:04:58 GMT 2012
Rank5Aligned Residues277
% Identity13%Templatec3t1bB_
PDB info PDB header:transcriptionChain: B: PDB Molecule:transcriptional regulator, lysr family; PDBTitle: crystal structure of the full-length aphb n100e variant
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5....10.........20.........30.........40.........50.........60.........70.........80....
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Query Sequence  ISKKMRNFILLAQTNNIARAAEKIHMTASPFGKSIAALEEQIGYTLFTRKDNNISLNKAGQELYQKLFPVYQRLSAIDNE
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Template Sequence  KLDDLNLFRLVVENGSYTSTSKKTMIPVATITRRIQALEDSLNLRLLNRHARKLTLTEAGERFYKDCSPLLERLASMTEE
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   2.......10.........20.........30.........40.........50.........60.........70.........80.
 
   85....90.........100..... ....110.........120.........130.........140.........150.........160..
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Query Sequence  IHNSGRRSREIVIGIDNTYPT. . IIFDQLISLGDKYEGVTAQPVEFSENGVIDNLFDRQLDFIISPQHVSARVQELENLT
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Template Sequence  ITDECRGASGRIRISAPSELTKRMMMPMFNAFMEKYPDIHIELMMSNQ. . . . ADLDPTEWDVIFRVGPQRDSSLIARKIG
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   82.......90.........100.........110.........120......... 130.........140.........150.......
 
   163......170.........180.........190.........200.........210.........220.........230.........240..
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Query Sequence  ISELPPLRLGFLVSRRYEERQEQELLQELPWLQMRFQNRANFEAMIDANMRPCGINPTIIYRPYSFMAKISAVERGHFLT
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Template Sequence  EVK. . . DILVASPQYLSSHPQPTHAEELHQHQLLKGYPLLKWQL. TNSQGETVVNSDRGRFQASALNVVRSACSEGLGIT
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   159160. ........170.........180.........190......... 200.........210.........220.........230....
 
   243.. ....250.........260.........270.........280.........
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Query Sequence  VIP. HFAWRLVNPATLKYFDAPHRPMYMQEYLYSIRNHRYTATMLQHI
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Template Sequence  LMPDVMLREFLEDGSLVQVLSDWSSNPRDIYMLYNHKDHQPEKVRLFI
Template Known Secondary structure  GGGTTSS

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   235....240.........250.........260.........270.........280..
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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