 |
| Job Description | P52044 | | Confidence | 97.32% | Date | Thu Jan 5 12:04:58 GMT 2012 |
| Rank | 68 | Aligned Residues | 73 |
| % Identity | 16% | Template | c2it0A_ |
| PDB info |
PDB header:transcription/dna | Chain: A: PDB Molecule:iron-dependent repressor ider; |
PDBTitle: crystal structure of a two-domain ider-dna complex crystal2 form ii
|
| Resolution | 2.60 Å |
|
| | |
9 | 10 | . | . | . | . | . | . | . | . | . | |
|
|
20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | |
. | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . |
| Predicted Secondary structure | |
 | | | | | | | | | |
| . | . | . |
| | | | | | | | |
|
|
| | | | | | | | | | | | | | | |
|
|  | | | |  |
|
| . |
|
| | | |
|
| | | | | | | | | | | | | | | | | | | | | | |
| Query SS confidence | |
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence | |
M | R | N | F | I | L | L | A | Q | T | N | . |
. |
. |
N | I | A | R | A | A | E | K | I | H | M | T | A | S | P | F | G | K | S | I | A | A | L | E | E | Q | I | G | Y | T | L | F | T | R | K | D | . |
N | N | I | S | L | N | K | A | G | Q | E | L | Y | Q | K | L | F | P | V | Y | Q | R | L | S | A | I | D | N | E |
| Query Conservation | |
| | |
| | |
| | | |
| . | . | . |
| |
| |
|
| | |
| |
|
|
| |
|
|
| | |
| | |
|
| | |
|
| | |
|
| |
| | | . | | | | |
|
| | |
| | |
| | | | | | | |
| | | | | | | | | |
| Alig confidence | |
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation | |
| |
|
| | |
| | | | | | | | | | | |
|
| | |
| |
|
| | |
|
| | | |
| | |
| | | . | . | . | |
|
|
| | | | | | | |
| |
|
| | |
| | | |
| | |
| | | |
|
| | |
| |
|
| | |
| Template Sequence | |
L | R | T | I | Y | D | L | E | E | E | G | V | T | P | L | R | A | R | I | A | E | R | L | D | Q | S | G | P | T | V | S | Q | T | V | S | R | M | E | R | . |
. |
. |
D | G | L | L | R | V | A | G | D | R | H | L | E | L | T | E | K | G | R | A | L | A | I | A | V | M | R | K | H | R | L | A | E | R | L | L | V | D |
| Template Known Secondary structure | |
| | | | | | | | | T | T |
|
|
|
| | | | | | | | T | T |
|
| | | | | | | | | | | | | | . | . | . | T | T | S | | | |
| T | T |
|
| | | |
| | | | | | | | | | | | | | | | | | | | | | | |
| Template Predicted Secondary structure | |
| | | | | | | | |
|
|
|
|
|
| | | | | | | | |
|
|
| | | | | | | | | | | | | | . | . | . |
|
|
| | | | |
|
|
| | | | |
|
|
| | | | | | | | | | | | | | | | | | | | | |
| Template SS confidence | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| | |
12 | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | |
|
|
. | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . |
| |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
| |
|
|
|
