Job Description Q9JMT3 Confidence 99.17% Date Thu Jan 5 12:38:08 GMT 2012 Rank 16 Aligned Residues 140 % Identity 18% Template c3hpgC_ PDB info PDB header:transferase Chain: C: PDB Molecule:integrase; PDBTitle: visna virus integrase (residues 1-219) in complex with ledgf2 ibd: examples of open integrase dimer-dimer interfaces Resolution 3.28 Å

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		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	N	Q	K	W	A	G	D	I	T	Y	L	R	T	D	E	G	W	L	Y	L	A	V	V	I	D	L	W	S	R	A	V	I	G	W	S	M	S	P	R	M	T	A	Q	L	A	C	D	A	L	Q	M	A	L	W	R	R	K	R	P	W	N	V	I	V	H	T	D	R	G	G	Q	Y	C	S	A	D	Y	Q	A
Query Conservation
Alig confidence														.	.	.	.																									.																		.	.	.
Template Conservation														.	.	.	.																									.																		.	.	.
Template Sequence		M	I	D	H	W	Q	V	D	Y	T	H	Y	.	.	.	.	E	D	K	I	I	L	V	W	V	E	T	N	S	G	L	I	Y	A	E	R	V	K	G	E	.	T	G	Q	E	F	R	V	Q	T	M	K	W	Y	A	M	F	A	.	.	.	P	K	S	L	Q	S	D	N	G	P	A	F	V	A	E	S	T	Q	L
Template Known Secondary structure														.	.	.	.	S	S									T	T	T									S			.																S		.	.	.		S						S
Template Predicted Secondary structure														.	.	.	.																									.																		.	.	.
Template SS confidence
		48	.	50	.	.	.	.	.	.	.	.	.					60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.		.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100				.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.		.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure																																					.
Query SS confidence																																					.
Query Sequence		Q	L	K	R	H	N	L	R	G	S	M	S	A	K	G	C	C	Y	D	N	A	C	V	E	S	F	F	H	S	L	K	V	E	C	I	.	H	G	E	H	F	I	S	R	E	I	M	R	A	T	V	F	N	Y	I	E	C	D	Y	N	R	W	R	R	H	S	W	C	G	G	L	S	P	E	Q
Query Conservation																																					.
Alig confidence																																					.																.	.	.	.								.							.
Template Conservation																																																					.	.	.	.								.							.
Template Sequence		L	M	K	Y	L	G	I	E	H	T	T	G	I	P	W	N	P	Q	S	Q	A	L	V	E	R	T	H	Q	T	L	K	N	T	L	E	K	L	I	P	M	F	N	A	F	E	S	A	L	A	G	T	.	.	.	.	L	I	T	L	N	I	K	.	R	K	G	G	L	G	.	T	S	P	M	D
Template Known Secondary structure							T						S	S				T	T																				G	G	G		S	S									.	.	.	.						T	T	.			B	T	T	T	.	B
Template Predicted Secondary structure																																																					.	.	.	.								.							.
Template SS confidence
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.					.	.	.	.	.	.	.		.	190	.	.	.	.		.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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