Job Description Q9JMT3 Confidence 99.70% Date Thu Jan 5 12:38:08 GMT 2012 Rank 1 Aligned Residues 150 % Identity 18% Template c3f9kV_ PDB info PDB header:viral protein, recombination Chain: V: PDB Molecule:integrase; PDBTitle: two domain fragment of hiv-2 integrase in complex with ledgf ibd Resolution 3.20 Å

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		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	P	N	Q	K	W	A	G	D	I	T	Y	L	R	T	D	E	G	W	L	Y	L	A	V	V	I	D	L	W	S	R	A	V	I	G	W	S	M	S	P	R	M	T	A	Q	L	A	C	D	A	L	Q	M	A	L	W	R	R	K	R	P	W	N	V	I	V	H	T	D	R	G	G	Q	Y	C	S	A	D	Y	Q
Query Conservation
Alig confidence															.	.	.	.																																						.	.	.	.
Template Conservation															.	.	.	.																																						.	.	.	.
Template Sequence		A	E	L	G	T	W	Q	M	D	C	T	H	L	.	.	.	.	E	G	K	I	I	I	V	A	V	H	V	A	S	G	F	I	E	A	E	V	I	P	Q	E	S	G	R	Q	T	A	L	F	L	L	K	L	A	.	.	.	.	S	R	W	P	I	T	H	L	H	T	D	N	G	A	N	F	T	S	Q	E	V	K
Template Known Secondary structure				T	T										.	.	.	.	T	T									T	T	T	T								S	S															.	.	.	.	T	T	S											T	T	T	T
Template Predicted Secondary structure															.	.	.	.																																						.	.	.	.
Template SS confidence
		56	.	.	.	60	.	.	.	.	.	.	.	.					.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.					.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	L	K	R	H	N	L	R	G	S	M	S	A	K	G	C	C	Y	D	N	A	C	V	E	S	F	F	H	S	L	K	V	E	C	I	H	G	E	H	F	I	S	R	E	I	M	R	A	T	V	F	N	Y	I	E	C	D	Y	N	R	W	R	R	H	S	W	C	G	G	L	S	P	E	Q	F	E	N	Q	N
Query Conservation
Alig confidence																																														.	.										.							.
Template Conservation																																														.	.										.							.
Template Sequence		M	V	A	W	W	I	G	I	E	Q	S	F	G	V	P	Y	N	P	Q	S	Q	G	V	V	E	A	M	N	H	H	L	K	N	Q	I	S	R	I	R	E	Q	A	N	T	.	.	I	E	T	I	V	L	M	A	V	.	H	C	M	N	F	K	.	R	R	G	G	I	G	D	M	T	P	S	E	R	L	I	N	M
Template Known Secondary structure								T						S	S		S	S	S	T	T	T	T																	G	G	G		S		.	.										.						T	.			B	T	T	T	T	B
Template Predicted Secondary structure																																														.	.										.							.
Template SS confidence
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.			.	.	.	.	.	.	.	.	180		.	.	.	.	.	.		.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
		287	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	T
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		204	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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