Job Description Q9JMT3 Confidence 97.84% Date Thu Jan 5 12:38:08 GMT 2012 Rank 22 Aligned Residues 116 % Identity 9% Template c2k27A_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:paired box protein pax-8; PDBTitle: solution structure of human pax8 paired box domain Resolution UNK

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.											.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.	.	.	.
Query Sequence		M	K	Y	V	F	I	E	K	H	Q	A	E	F	S	I	K	A	M	C	R	V	L	R	V	A	R	S	G	W	Y	T	W	C	Q	R	R	T	R	.	.	.	.	.	.	.	.	.	.	I	S	T	R	Q	Q	F	R	Q	H	C	D	S	V	V	L	A	A	F	T	R	S	K	Q	R	Y	C	A	P	R	L	T
Query Conservation																																								.	.	.	.	.	.	.	.	.	.
Alig confidence																																								.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	R	Q	R	I	V	D	L	A	H	Q	G	V	R	P	C	D	I	S	R	Q	L	R	V	S	H	G	C	V	S	K	I	L	G	R	Y	Y	E	T	G	S	I	R	P	G	V	I	G	G	S	K	P	K	V	A	T	P	K	V	V	E	K	I	G	D	Y	K	R	Q	N	P	T	M	F	A	W	E	I	R	D
Template Known Secondary structure													T											T			S										S	S	T	T	S																	T	T													S	S	S
Template Predicted Secondary structure
Template SS confidence
		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
		71	.	.	.	.	.					.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.
Query SS confidence								.	.	.	.
Query Sequence		D	E	L	R	A	Q	.	.	.	.	G	Y	P	F	N	V	K	T	V	A	A	S	L	R	C	Q	G	L	R	A	K	A	S	R	K	F	S	P	V	S	Y	R	A	H	G	L	P	V	S	E
Query Conservation								.	.	.	.
Alig confidence								.	.	.	.
Template Conservation
Template Sequence		R	L	L	A	E	G	V	C	D	N	D	T	V	P	S	V	S	S	I	N	R	I	I	R	T	K	V	Q	Q	P	F	N	L	P	M	D	S	G	A	P	G	G	G	S	H	H	H	H	H	H
Template Known Secondary structure							T		S		T	T	T	S														S				S
Template Predicted Secondary structure
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions