Job Description Q9JMT3 Confidence 99.35% Date Thu Jan 5 12:38:08 GMT 2012 Rank 11 Aligned Residues 141 % Identity 22% Template c1k6yB_ PDB info PDB header:transferase Chain: B: PDB Molecule:integrase; PDBTitle: crystal structure of a two-domain fragment of hiv-1 integrase Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Q	D	F	Y	A	S	G	P	N	Q	K	W	A	G	D	I	T	Y	L	R	T	D	E	G	W	L	Y	L	A	V	V	I	D	L	W	S	R	A	V	I	G	W	S	M	S	P	R	M	T	A	Q	L	A	C	D	A	L	Q	M	A	L	W	R	R	K	R	P	W	N	V	I	V	H	T	D	R	G	G	Q
Query Conservation
Alig confidence																							.	.	.	.																						.																				.	.	.
Template Conservation																							.	.	.	.																						.																				.	.	.
Template Sequence		C	D	K	C	Q	L	K	C	S	P	G	I	W	Q	L	D	C	T	H	L	E	.	.	.	.	G	K	V	I	L	V	A	V	H	V	A	S	G	Y	I	E	A	E	V	I	P	.	A	E	T	G	Q	E	T	A	Y	F	L	L	K	L	A	G	R	W	P	.	.	.	V	K	T	V	H	T	D	N	G	S	N
Template Known Secondary structure			T	T							T	T										T	.	.	.	.	T									T	T	T	T								S	.	S	S																S		.	.	.
Template Predicted Secondary structure																							.	.	.	.																						.																				.	.	.
Template SS confidence
		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60					.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.		.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100				.	.	.	.	.	.	.	.	.	110	.
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	C	S	A	D	Y	Q	A	Q	L	K	R	H	N	L	R	G	S	M	S	A	K	G	C	C	Y	D	N	A	C	V	E	S	F	F	H	S	L	K	V	E	C	I	H	G	E	H	F	I	S	R	E	I	M	R	A	T	V	F	N	Y	I	E	C	D	Y	N	R	W	R	R	H	S	W	C	G	G	L	S	P
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.																											.	.											.							.
Template Conservation																	.	.	.	.	.	.	.	.	.																											.	.											.							.
Template Sequence		F	T	S	T	T	V	K	A	A	C	D	W	A	G	I	.	.	.	.	.	.	.	.	.	K	Q	E	D	G	V	I	E	S	M	N	K	E	L	K	K	I	I	G	Q	V	R	D	Q	A	E	.	.	H	L	K	T	A	V	Q	M	A	V	.	F	I	H	N	K	K	.	R	K	G	G	I	G	G	Y	S	A
Template Known Secondary structure				S										T	T		.	.	.	.	.	.	.	.	.																						G	G	G		S	.	.	S										.						S	.				T	T	T	T
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.																											.	.											.							.
Template SS confidence
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.										.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.			.	.	.	.	.	.	.	.	170	.		.	.	.	.	.	.		.	.	180	.	.	.	.	.	.	.
		280	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		197	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions