Job Description Q9JMT3 Confidence 99.41% Date Thu Jan 5 12:38:08 GMT 2012 Rank 9 Aligned Residues 157 % Identity 13% Template c1bcoA_ PDB info PDB header:transposase Chain: A: PDB Molecule:bacteriophage mu transposase; PDBTitle: bacteriophage mu transposase core domain Resolution 2.40 Å

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		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure																																																																											.	.	.	.	.	.	.
Query SS confidence																																																																											.	.	.	.	.	.	.
Query Sequence		Q	K	W	A	G	D	I	T	Y	L	R	T	D	E	G	W	L	Y	L	A	V	V	I	D	L	W	S	R	A	V	I	G	W	S	M	S	P	R	M	T	A	Q	L	A	C	D	A	L	Q	M	A	L	W	R	R	K	R	P	W	N	V	I	V	H	T	D	R	G	G	Q	Y	C	S	.	.	.	.	.	.	.
Query Conservation																																																																											.	.	.	.	.	.	.
Alig confidence																																																																											.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	L	H	N	V	F	V	R	W	F	N	G	D	V	I	R	P	K	T	W	F	W	Q	D	V	K	T	R	K	I	L	G	W	R	C	D	V	S	E	N	I	D	S	I	R	L	S	F	M	D	V	V	T	R	Y	G	I	P	E	D	F	H	I	T	I	D	N	T	R	G	A	A	N	K	W	L	T	G	G	A
Template Known Secondary structure					S	B					T	T	S													T	T	T										S	S																					S	S								T	T	S	T	T	T	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
												203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.				230	.	.	.	.	.	.	.	.	.	240	.	.															.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																												.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.																												.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	A	D	Y	Q	A	Q	L	K	R	H	N	L	R	G	S	M	S	A	K	G	C	C	Y	D	N	A	C	.	.	.	V	E	S	F	F	H	S	L	K	V	E	C	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	G	E	H	F	I	S	R	E	I	M	R	A
Query Conservation		.	.	.	.	.	.	.	.	.	.																												.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																												.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	N	R	Y	R	F	K	V	K	E	D	D	P	K	G	L	F	L	L	M	G	A	K	M	H	W	T	S	V	V	A	G	K	G	W	G	Q	A	K	P	V	E	R	A	F	G	V	G	G	L	E	E	Y	V	D	K	H	P	A	L	A	G	A	Y	T	G	P	Y	G	D	R	A	V	D	A	E	L	F	L	K
Template Known Secondary structure		T	T	T	T	B	S		B													T						S	S	S		T	T						S	S		S	S	G	G	G	S	G	G	G	G	G	G	T	T	T	T		G	G	G	T	T	T	B					T	T	T
Template Predicted Secondary structure
Template SS confidence
		351	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430
		256	.	.	.	260	.	.	.	.	.	.	.	.					.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.
Query SS confidence															.	.	.	.
Query Sequence		T	V	F	N	Y	I	E	C	D	Y	N	R	W	.	.	.	.	R	R	H	S	W	C	G	G	L	S	P	E	Q	F	E	N	Q	N	L	A
Query Conservation															.	.	.	.
Alig confidence										.					.	.	.	.								.
Template Conservation										.																.
Template Sequence		T	L	A	E	G	V	A	M	.	F	N	A	R	T	G	R	E	T	E	M	C	G	G	K	.	L	S	F	D	D	V	F	E	R	E	Y	A
Template Known Secondary structure										.									S	T	T	T	T	T	T	.												T
Template Predicted Secondary structure										.																.
Template SS confidence
		439	440	.	.	.	.	.	.		.	.	.	450	.	.	.	.	.	.	.	.	.	460	.		.	.	.	.	.	.	.	.	470	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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