 |
Job Description | P37773 | Confidence | 94.78% | Date | Thu Jan 5 11:57:40 GMT 2012 |
Rank | 391 | Aligned Residues | 131 |
% Identity | 18% | Template | c3p7mC_ |
PDB info |
PDB header:oxidoreductase | Chain: C: PDB Molecule:malate dehydrogenase; |
PDBTitle: structure of putative lactate dehydrogenase from francisella2 tularensis subsp. tularensis schu s4
|
Resolution | 2.20 Å |
|
 |
  |   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | |
. | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | |
|
|
|
|
|
|
. | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| . |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
| . | . | . | . | . | . | . |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
M | R | I | H | I | L | G | I | C | G | T | F | M | G | G | L | A | M | L | A | R | Q | L | G | H | . |
E | V | T | G | S | D | A | N | V | Y | P | P | M | S | T | L | L | E | K | Q | G | I | . |
. |
. |
. |
. |
. |
. |
E | L | I | Q | G | Y | D | A | S | Q | L | E | P | Q | P | D | L | V | I | I | G | N | A | M | T |
Query Conservation |   |
|   |
|   |   |   |
|   |
|   |   |
|   |
|   |
|
|   |   |
|   |   |   |
|   | . |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|
| . | . | . | . | . | . | . |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |
|   |
|
|   |
|
|
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|   |
|
|
|
|
|   |
|
|   | . |   |
|
|   |   |   |   |   |   |   |
|   |
|
|   |
|   |
|
|   |   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|
|   |   |
|
|
|
|
|
|   |
|   |   |   |
Template Sequence |   |
K | K | I | T | L | V | G | A | G | N | I | G | G | . |
T | L | A | H | L | A | L | I | K | Q | L | G | D | V | V | L | F | D | I | A | Q | G | X | P | N | G | K | A | L | D | L | L | Q | T | C | P | I | E | G | V | D | F | K | V | R | G | T | N | D | Y | K | D | L | E | N | S | D | V | V | I | V | T | A | G | V | P |
Template Known Secondary structure |   |
|  |  |  |  |  |
|
| S |  |  |  |  | . |  |  |  |  |  |  |  |  | T | T |
|
|  |  |  |  |  |
| S | S | S | S |  |  |  |  |  |  |  |  |  |  | T | T |  |  |  |  | T |
|
|
|
|  |  |  |  | S |
| G | G | G | G | T | T |
| S |  |  |  |  |
|
| S |
|
|
Template Predicted Secondary structure |   |
|  |  |  |  |  |
|
|
|
|  |  |  | . |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
4 | . | . | . | . | . | 10 | . | . | . | . | . | . | |
. | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . |
  |
  |   |
73 | . | . | |
. | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
| . |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
Query SS confidence |   |
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
R | G | N | . |
P | C | V | E | A | V | L | E | K | N | I | P | Y | M | S | G | P | Q | W | L | H | D | F | V | L | R | D | R | W | V | L | A | V | A | G | T | H | G | K | T | T | T | A | G | M | A | T | W | I | L | E | Q | C | G | Y | K | P | G | F | V | I | G |
Query Conservation |   |
  |   |   | . |
|   |   |   |   |
|   |   |   |   |
|   |
|   |   |   |   |
|   |
|   |   |   |   |   |   |   |   |   |
|
|   |
|
|
|
|
|
|
|
|
|
|   |   |
|
|   |   |
|
|   |   |   |
|   |   |   |   |   |   |   |
|
Alig confidence |   |
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|   |   |
|   |   |   |   |   |   |
|   |   |
|   | . | . |   |   |
|   |   |   |
|   |   |   |   |
|   |
|   |
|
|   |   |
|
|
| . | . | . |   |
|
|   |
|   |   |   |   |   |   |
|
|   |   |   |   |
|
|
|
|
Template Sequence |   |
R | K | P | G | X | S | R | D | D | L | L | G | I | N | I | K | V | X | . |
. |
Q | T | V | G | E | G | I | K | H | N | C | P | N | A | F | V | I | C | I | T | N | P | . |
. |
. |
L | D | I | X | V | N | X | L | Q | K | F | S | G | V | P | D | N | K | I | V | G |
Template Known Secondary structure |   |
|
| T | T |
|
|  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |
| T | T | S |  |  |  |  |
|
| S | S | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| G | G | G |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
83 | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | |
|
. | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | |
|
|
. | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|