Job Description P37773 Confidence 99.82% Date Thu Jan 5 11:57:40 GMT 2012 Rank 26 Aligned Residues 123 % Identity 55% Template c3mvnA_ PDB info PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramate:l-alanyl-gamma-d-glutamayl-medo- PDBTitle: crystal structure of a domain from a putative udp-n-acetylmuramate:l-2 alanyl-gamma-d-glutamayl-medo-diaminopimelate ligase from haemophilus3 ducreyi 35000hp Resolution 1.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	E	L	R	G	E	A	N	G	V	T	V	Y	D	D	F	A	H	H	P	T	A	I	L	A	T	L	A	A	L	R	G	K	V	G	G	T	A	R	I	I	A	V	L	E	P	R	S	N	T	M	K	M	G	I	C	K	D	D	L	A	P	S	L	G	R	A	D	E	V	F	L	L	Q	P	A	H	I	P
Query Conservation
Alig confidence																																																			.	.	.	.	.	.	.	.	.	.																				.	.
Template Conservation																																																			.	.	.	.	.	.	.	.	.	.																				.	.
Template Sequence		R	L	E	V	K	G	V	V	N	N	I	T	V	Y	D	D	F	A	H	H	P	T	A	I	T	A	T	I	D	A	L	R	A	K	V	G	Q	Q	R	I	L	A	V	L	E	P	R	K	H	.	.	.	.	.	.	.	.	.	.	E	L	A	T	S	L	Q	D	A	D	S	V	F	I	Y	Q	P	W	Q	.	.
Template Known Secondary structure										T	T										S																T	T	S												.	.	.	.	.	.	.	.	.	.							T	T		S										.	.
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.																				.	.
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.											.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450
Predicted Secondary structure
Query SS confidence
Query Sequence		W	Q	V	A	E	V	A	E	A	C	V	Q	P	A	H	W	S	G	D	V	D	T	L	A	D	M	V	V	K	T	A	Q	P	G	D	H	I	L	V	M	S	N	G	G	F	G	G	I	H	Q	K	L	L	D	G	L	A
Query Conservation
Alig confidence		.	.
Template Conservation		.	.
Template Sequence		.	.	V	S	E	V	L	A	N	L	A	Q	P	A	I	S	A	D	D	V	D	E	L	V	X	R	I	V	Q	Q	A	K	P	N	D	H	I	L	I	X	S	N	G	A	F	G	G	I	H	Q	K	L	L	T	A	L	A
Template Known Secondary structure		.	.						T	T			S						S	S														T	T								S	S		G	G	G									T
Template Predicted Secondary structure		.	.
Template SS confidence
				398	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions