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Job DescriptionP37773
Confidence100.00%DateThu Jan 5 11:57:40 GMT 2012
Rank6Aligned Residues427
% Identity19%Templatec3lk7A_
PDB info PDB header:ligaseChain: A: PDB Molecule:udp-n-acetylmuramoylalanine--d-glutamate ligase; PDBTitle: the crystal structure of udp-n-acetylmuramoylalanine-d-2 glutamate (murd) ligase from streptococcus agalactiae to3 1.5a
Resolution1.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30...... ...40.........50......... 60.........70........
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Query Sequence  RIHILGICGTFMGGLAMLARQLGHEVTGSDANVYP. . PMSTLLEKQGIELIQGYDASQLE. PQPDLVIIGNAMTRGNPCV
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Template Sequence  KVLVLGLARSGEAA. ARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCGSHPLELLDEDFCYXIKNPGIPYNNPXV
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   11........20.... .....30.........40.........50.........60.........70.........80.........
 
   7980.........90.........100.........110.........120.........130.........140.........150........
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Query Sequence  EAVLEKNIPYMSGPQWLHDFVLRDRWVLAVAGTHGKTTTAGMATWILEQCGYKPGFVIGGVPGNFEVSAHLGESDFFVIE
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Template Sequence  KKALEKQIPVLTEVELAYLVSES. . QLIGITGSNGKTTTTTXIAEVLNAGGQRGLLAGNIGFPASEVVQAANDKDTLVXE
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   90.........100.........110.. .......120.........130.........140.........150.........160.......
 
   159160.........170.........180.........190.........200.........210.........220.........230........
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Query Sequence  ADEYDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQ
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Template Sequence  LSSFQLX. . . . . . GVKEFRPHIAVITNLXPTHLDYHGSFEDYVAAKWNIQNQXSSSDFLVLNFNQGISKELAKT. TKATI
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   168.170.... .....180.........190.........200.........210.........220.........230..... ....240
 
   239240.........250.........260.........270.........280.........290.........300.........310........
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Query Sequence  ELVGEQGHWQAKKLTTDASEWEVLLDGEKVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFINARRRLELR
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Template Sequence  VPFSTTEKVDGAYVQ. . . DKQLFYKGENIXSVDDIGVPGSHNVENALATIAVAKLAGISNQVIRETLSNFGGVKHRLQSL
Template Known Secondary structure  SSS

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   241........250..... ....260.........270.........280.........290.........300.........310.......
 
   319320......... 330.........340.........350.........360.........370.........380.........390.......
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Query Sequence  GEANGVTVYDD. FAHHPTAILATLAALRGKVGGTARIIAVLEPRSNTMKMGICKDDLAPSLGRADEVFLLQPAHIPWQVA
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Template Sequence  GKVHGISFYNDSKSTNILATQKALSGF. . . . . DNTKVILIAGGLDRGNEFDELIPDITG. . . LKHXVVL. . . GESASRVK
Template Known Secondary structure  TT
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   318.320.........330.........340.... .....350.........360.........370. ....... .380......
 
   398.400.........410.........420.........430... ..... .440.........450..
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Query Sequence  EVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILVM. SNGGF. . . . . . . . . GGIHQKLLDGLAKK
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Template Sequence  RAAQKAGVTYSDALDVRDAVHKAYEVAQQGDVILLSPANASWDXYKNFEVRGDEFIDTFESLRGE
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   387..390.........400.........410.........420.........430.........440.........450.
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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