Job Description P37773 Confidence 100.00% Date Thu Jan 5 11:57:40 GMT 2012 Rank 1 Aligned Residues 439 % Identity 27% Template c2f00A_ PDB info PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramate--l-alanine ligase; PDBTitle: escherichia coli murc Resolution 2.50 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	I	H	I	L	G	I	C	G	T	F	M	G	G	L	A	M	L	A	R	Q	L	G	H	E	V	T	G	S	D	A	N	V	Y	P	P	M	S	T	L	L	E	K	Q	G	I	E	L	I	Q	G	Y	D	A	S	Q	L	E	P	Q	P	D	L	V	I	I	G	N	A	M	T	R	G	N	P	C	V	E	A	V
Query Conservation
Alig confidence																																		.																									.
Template Conservation																																		.																									.
Template Sequence		H	I	H	F	V	G	I	G	G	A	G	X	G	G	I	A	E	V	L	A	N	E	G	Y	Q	I	S	G	S	D	L	A	.	P	N	P	V	T	Q	Q	L	X	N	L	G	A	T	I	Y	F	N	H	R	P	E	N	V	.	R	D	A	S	V	V	V	V	S	S	A	I	S	A	D	N	P	E	I	V	A	A
Template Known Secondary structure							T	T	T	S	T	T											T	T								S	S	.											T	T					S	S			G	G	G	G	.	T	T		S						T	T			T	T
Template Predicted Secondary structure																																		.																									.
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.		.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.		.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	K	N	I	P	Y	M	S	G	P	Q	W	L	H	D	F	V	L	R	D	R	W	V	L	A	V	A	G	T	H	G	K	T	T	T	A	G	M	A	T	W	I	L	E	Q	C	G	Y	K	P	G	F	V	I	G	G	V	P	G	N	F	E	V	S	A	H	L	G	E	S	D	F	F	V	I	E	A	D	E
Query Conservation
Alig confidence																				.
Template Conservation																				.
Template Sequence		H	E	A	R	I	P	V	I	R	R	A	E	X	L	A	E	L	X	.	R	F	R	H	G	I	A	I	A	G	T	H	G	K	T	T	T	T	A	X	V	S	S	I	Y	A	E	A	G	L	D	P	T	F	V	N	G	G	L	V	K	A	A	G	V	H	A	R	L	G	H	G	R	Y	L	I	A	E	A	D	E
Template Known Secondary structure				T	T															.	T	T	S							S	S	S																T	T												T	T	T	T							S	S	S
Template Predicted Secondary structure																				.
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.		.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.		.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.		.	.	.
Predicted Secondary structure																																			.																																											.
Query SS confidence																																			.																																											.
Query Sequence		Y	D	C	A	F	F	D	K	R	S	K	F	V	H	Y	C	P	R	T	L	I	L	N	N	L	E	F	D	H	A	D	I	F	.	D	D	L	K	A	I	Q	K	Q	F	H	H	L	V	R	I	V	P	G	Q	G	R	I	I	W	P	E	N	D	I	N	L	K	Q	T	M	A	M	G	C	W	S	.	E	Q	E
Query Conservation																																			.																																											.
Alig confidence				.	.	.	.	.	.	.																									.																																											.
Template Conservation				.	.	.	.	.	.	.
Template Sequence		S	D	.	.	.	.	.	.	.	A	S	F	L	H	L	Q	P	X	V	A	I	V	T	N	I	E	A	D	H	X	D	T	Y	Q	G	D	F	E	N	L	K	Q	T	F	I	N	F	L	H	N	L	P	F	Y	G	R	A	V	X	C	V	D	D	P	V	I	R	E	L	L	P	R	V	G	R	Q	T	T	T	Y
Template Known Secondary structure		T	T	.	.	.	.	.	.	.	S	G	G	G	G				S									S		S	G	G	G	T	T	T														T	T	S		T	T							T	T	S							G	G	G			S
Template Predicted Secondary structure				.	.	.	.	.	.	.
Template SS confidence
		178	.								180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.			.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.
Query SS confidence																			.	.
Query Sequence		L	V	G	E	Q	G	H	W	Q	A	K	K	L	T	T	D	A	.	.	S	E	W	E	V	L	L	D	G	E	K	V	G	E	V	K	W	S	L	V	G	E	H	N	M	H	N	G	L	M	A	I	A	A	A	R	H	V	G	V	A	P	A	D	A	A	N	A	L	G	S	F	I	N	A	R	R	R	L	E	L
Query Conservation																			.	.
Alig confidence																			.	.
Template Conservation
Template Sequence		G	F	S	E	D	A	D	V	R	V	E	D	Y	Q	Q	I	G	P	Q	G	H	F	T	L	L	R	Q	D	K	E	P	X	R	V	T	L	N	A	P	G	R	H	N	A	L	N	A	A	A	A	V	A	V	A	T	E	E	G	I	D	D	E	A	I	L	R	A	L	E	S	F	Q	G	T	G	R	R	F	D	F
Template Known Secondary structure			S	S	T	T		S										T	T									T	T	S								S	S		S																		T												T				B	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
		318	.										320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.	.	.	.
Query Sequence		R	G	.	.	.	.	.	.	.	.	.	E	A	N	G	V	T	V	Y	D	D	F	A	H	H	P	T	A	I	L	A	T	L	A	A	L	R	G	K	V	G	G	T	A	R	I	I	A	V	L	E	P	R	S	N	T	M	K	M	G	I	C	K	D	D	L	A	P	S	L	G	R	A	D	E	V	F	L	L	Q
Query Conservation				.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.																															.													.
Template Conservation																																											.													.
Template Sequence		L	G	E	F	P	L	E	P	V	N	G	K	S	G	T	A	X	L	V	D	D	Y	G	H	H	P	T	E	V	D	A	T	I	K	A	A	R	A	G	W	P	.	D	K	N	L	V	X	L	F	Q	P	H	R	.	F	T	R	T	R	D	L	Y	D	D	F	A	N	V	L	T	Q	V	D	T	L	L	X	L	E
Template Known Secondary structure							S	S	S	S	S	S		S	S											S													T	T			.	S	S									B		.					T	T	T									T	T	S	S
Template Predicted Secondary structure																																											.													.
Template SS confidence
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.		.	.	.	.	.	.	.	.	380	.	.	.		.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.
		389				390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.
Predicted Secondary structure			.	.	.
Query SS confidence			.	.	.
Query Sequence		P	.	.	.	A	H	I	P	W	Q	V	A	E	V	A	E	A	C	V	Q	P	A	H	W	S	G	D	V	D	T	L	A	D	M	V	V	K	T	A	Q	P	G	D	H	I	L	V	M	S	N	G	G	F	G	G	I	H	Q	K	L	L	D	G	L	A	K	K
Query Conservation			.	.	.
Alig confidence			.	.	.
Template Conservation
Template Sequence		V	Y	P	A	G	E	A	P	I	P	G	A	D	S	R	S	L	C	R	T	D	P	I	L	V	P	D	P	A	R	V	A	E	X	L	A	P	V	L	T	G	N	D	L	I	L	V	Q	G	A	G	N	I	G	K	I	A	R	S	L	A	E	I	K	L	K	P
Template Known Secondary structure			B		S	S	S				T	T	S	S					T	T									S	S							G	G	G			S									S	T	T											T	T	T
Template Predicted Secondary structure
Template SS confidence
		409	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.