Job Description P37773 Confidence 100.00% Date Thu Jan 5 11:57:40 GMT 2012 Rank 8 Aligned Residues 399 % Identity 17% Template c2am1A_ PDB info PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramoylalanine-d-glutamyl-lysine-d-alanyl-d- PDBTitle: sp protein ligand 1 Resolution 2.50 Å

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		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.			.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.							90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure																											.	.																																				.	.	.	.	.	.
Query SS confidence																											.	.																																				.	.	.	.	.	.
Query Sequence		S	D	A	N	V	Y	P	P	M	S	T	L	L	E	K	Q	G	I	E	L	I	Q	G	Y	D	.	.	A	S	Q	L	E	P	Q	P	D	L	V	I	I	G	N	A	M	T	R	G	N	P	C	V	E	A	V	L	E	K	N	I	P	Y	M	.	.	.	.	.	.	S	G	P	Q	W	L	H	D	F	V	L	R
Query Conservation																											.	.																																				.	.	.	.	.	.
Alig confidence																					.	.					.	.																			.	.	.	.	.	.	.	.	.	.	.	.						.	.	.	.	.	.
Template Conservation																					.	.																									.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	D	S	R	L	I	G	T	G	D	L	F	V	P	L	K	G	A	R	.	.	D	G	H	D	F	I	E	T	A	F	E	N	G	A	A	V	T	L	S	E	K	E	V	S	.	.	.	.	.	.	.	.	.	.	.	.	N	H	P	Y	I	L	V	D	D	V	L	T	A	F	Q	S	L	A	S	Y	Y	L	E
Template Known Secondary structure		S		G	G	G			T	T							B	S	S	S	.	.	B	G	G	G	G								T		S					S	S				.	.	.	.	.	.	.	.	.	.	.	.	S	S						S
Template Predicted Secondary structure																					.	.																									.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.			50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.													.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
				102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.					150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure		.	.																																																	.	.	.	.
Query SS confidence		.	.																																																	.	.	.	.
Query Sequence		.	.	D	R	W	V	L	A	V	A	G	T	H	G	K	T	T	T	A	G	M	A	T	W	I	L	E	Q	C	G	Y	K	P	G	F	V	I	G	G	V	P	G	N	F	E	V	S	A	H	L	.	.	.	.	G	E	S	D	F	F	V	I	E	A	D	E	Y	D	C	A	F	F	D	K	R	S	K	F	V	H
Query Conservation		.	.																																																	.	.	.	.
Alig confidence		.	.																																	.																.	.	.	.																									.	.
Template Conservation																																				.																																												.	.
Template Sequence		K	T	T	V	D	V	F	A	V	T	G	S	N	G	K	T	T	T	K	D	X	L	A	H	L	L	S	T	R	Y	K	T	Y	K	.	T	Q	G	N	Y	N	N	E	I	G	L	P	Y	T	V	L	H	X	P	E	G	T	E	K	L	V	L	E	X	G	Q	D	H	L	G	D	I	H	L	L	S	E	L	.	.
Template Known Secondary structure															S	S	S											T	T	T	S					.			T	T			S	T	T								T			T	T											S	S	T	T									.	.
Template Predicted Secondary structure																																				.																																												.	.
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130		.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	C	P	R	T	L	I	L	N	N	L	E	F	D	H	A	D	I	F	D	D	L	K	A	I	Q	K	Q	F	H	H	L	V	R	I	V	P	G	Q	G	R	I	I	W	P	E	N	D	I	N	L	K	Q	T	M	A	M	G	C	W	S	E	Q	E	L	V	G	E	Q	G	H	W	Q	A	K	K	L	T	T	D
Query Conservation
Alig confidence																																																		.	.	.
Template Conservation																																																		.	.	.
Template Sequence		A	R	P	K	T	A	I	V	T	L	V	G	E	A	H	L	A	F	F	K	D	R	S	E	I	A	K	G	K	X	Q	I	A	D	G	X	A	S	G	S	L	L	L	A	P	A	D	P	.	.	.	I	V	E	D	Y	L	P	I	D	K	K	V	V	R	F	G	Q	G	A	E	L	E	I	T	D	L	V	E	R
Template Known Secondary structure					S										S	S		T	T												G	G	G	G	T	T			T	T							S		G	.	.	.	G	G	G	G	G			S	S	S						S	T	T	S	S	B
Template Predicted Secondary structure																																																		.	.	.
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.				.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.		330	.	.	.	.
Predicted Secondary structure																																																																												.
Query SS confidence																																																																												.
Query Sequence		A	S	E	W	E	V	L	L	D	G	E	K	V	G	E	V	K	W	S	L	V	G	E	H	N	M	H	N	G	L	M	A	I	A	A	A	R	H	V	G	V	A	P	A	D	A	A	N	A	L	G	S	F	I	N	A	R	R	R	L	E	L	R	G	E	A	N	G	V	T	V	Y	D	D	.	F	A	H	H	P
Query Conservation																																																																												.
Alig confidence															.																																																													.
Template Conservation															.
Template Sequence		K	D	S	L	T	F	K	A	N	F	L	E	Q	.	A	L	D	L	P	V	T	G	K	Y	N	A	T	N	A	X	I	A	S	Y	V	A	L	Q	E	G	V	S	E	E	Q	I	R	L	A	F	Q	H	L	E	L	T	R	N	R	T	E	W	K	K	A	A	N	G	A	D	I	L	S	D	V	Y	N	A	N	P
Template Known Secondary structure		S	S							T	T		S	S	.					S	S																			T	T										G	G	G								S						T	T	T								S			S
Template Predicted Secondary structure															.
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.		.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.			.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.			.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.																												.	.																																.
Query SS confidence																			.	.																												.	.																																.
Query Sequence		T	A	I	L	A	T	L	A	A	L	R	G	K	V	G	G	T	.	.	A	R	I	I	A	V	L	E	P	R	S	N	T	M	K	M	G	I	C	K	D	D	L	A	P	S	L	.	.	G	R	A	D	E	V	F	L	L	Q	P	A	H	I	P	W	Q	V	A	E	V	A	E	A	C	V	Q	P	A	H	W	.
Query Conservation																			.	.																												.	.																																.
Alig confidence																			.	.																												.	.																																.
Template Conservation
Template Sequence		T	A	X	K	L	I	L	E	T	F	S	A	I	P	A	N	E	G	G	K	K	I	A	V	L	A	D	X	K	E	L	G	D	Q	S	V	Q	L	H	N	Q	X	I	L	S	L	S	P	D	V	L	D	I	V	I	F	Y	G	E	D	I	A	Q	L	A	Q	L	A	S	Q	X	F	P	I	G	H	V	Y	Y	F
Template Known Secondary structure												T	T	S				S	S															T	T								G	G	G	G			T	T	T		S							S	T	T											S		T	T
Template Predicted Secondary structure
Template SS confidence
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
							410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.
Predicted Secondary structure		.	.	.	.	.
Query SS confidence		.	.	.	.	.
Query Sequence		.	.	.	.	.	S	G	D	V	D	T	L	A	D	M	V	V	K	T	A	Q	P	G	D	H	I	L	V	M	S	N	G	G	F	G	G	I	H	Q	K	L	L	D	G	L	A	K
Query Conservation		.	.	.	.	.
Alig confidence		.	.	.	.	.																															.	.
Template Conservation																																					.	.
Template Sequence		K	K	T	E	D	Q	D	Q	F	E	D	L	V	K	Q	V	K	E	S	L	G	A	H	D	Q	I	L	L	K	G	S	N	S	X	N	.	.	L	A	K	L	V	E	S	L	E	N
Template Known Secondary structure			B	S	S	S		B	T														T	T							S	S					.	.
Template Predicted Secondary structure																																					.	.
Template SS confidence
		410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.			.	.	.	.	.	450	.	.	.	.