Job Description P37773 Confidence 100.00% Date Thu Jan 5 11:57:40 GMT 2012 Rank 4 Aligned Residues 409 % Identity 26% Template c1gqqA_ PDB info PDB header:cell wall biosynthesis Chain: A: PDB Molecule:udp-n-acetylmuramate-l-alanine ligase; PDBTitle: murc - crystal structure of the apo-enzyme from haemophilus2 influenzae Resolution 3.1 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	I	H	I	L	G	I	C	G	T	F	M	G	G	L	A	M	L	A	R	Q	L	G	H	E	V	T	G	S	D	A	N	V	Y	P	P	M	S	T	L	L	E	K	Q	G	I	E	L	I	Q	G	Y	D	A	S	Q	L	E	P	Q	P	D	L	V	I	I	G	N	A	M	T	R	G	N	P	C	V	E	A	V
Query Conservation
Alig confidence																																			.																									.
Template Conservation																																			.																									.
Template Sequence		Q	I	H	F	I	G	I	G	G	A	G	M	S	G	I	A	E	I	L	L	N	E	G	Y	Q	I	S	G	S	D	I	A	D	.	G	V	V	T	Q	R	L	A	Q	A	G	A	K	I	Y	I	G	H	A	E	E	H	I	E	.	G	A	S	V	V	V	V	S	S	A	I	K	D	D	N	P	E	L	V	T	S
Template Known Secondary structure							S	T	T	S	T	T												T								S			.	S										T						S			G	G	G	G	T	.	T		S						S	S	S		T	T
Template Predicted Secondary structure																																			.																									.
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.		.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.		.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	K	N	I	P	Y	M	S	G	P	Q	W	L	H	D	F	V	L	R	D	R	W	V	L	A	V	A	G	T	H	G	K	T	T	T	A	G	M	A	T	W	I	L	E	Q	C	G	Y	K	P	G	F	V	I	G	G	V	P	G	N	F	E	V	S	A	H	L	G	E	S	D	F	F	V	I	E	A	D	E
Query Conservation
Alig confidence																				.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	Q	K	R	I	P	V	I	Q	R	A	Q	M	L	A	E	I	M	.	R	F	R	H	G	I	A	V	A	G	T	H	G	K	T	T	T	T	A	M	I	S	M	I	Y	T	Q	A	K	L	D	P	T	F	V	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	Y	L	I	A	E	A	D	E
Template Known Secondary structure				T																.		T	S							S	S	S	S															T	T								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																				.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.		.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.																	.	.	.	.	.	.	.	.	160
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	D	C	A	F	F	D	K	R	S	K	F	V	H	Y	C	P	R	T	L	I	L	N	N	L	E	F	D	H	A	D	I	F	D	D	L	K	A	I	Q	K	Q	F	H	H	L	V	R	I	V	P	G	Q	G	R	I	I	W	P	E	N	D	I	N	L	K	Q	T	M	A	M	G	C	W	S	E	Q	E	L	V
Query Conservation
Alig confidence				.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.
Template Sequence		F	L	.	.	.	.	.	.	.	.	.	.	.	H	L	Q	P	M	V	S	V	V	T	N	M	E	F	E	K	M	K	A	T	.	.	.	.	.	.	.	.	.	Y	V	K	F	L	H	N	L	P	F	Y	G	L	A	V	M	C	A	D	D	P	V	L	M	E	L	V	P	K	V	G	R	Q	V	I	T	Y	G
Template Known Secondary structure				.	.	.	.	.	.	.	.	.	.	.	S				S																.	.	.	.	.	.	.	.	.							T	S		T	T							T	T													S
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.
Template SS confidence
		181	.												.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.										.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
					242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	G	E	Q	G	H	W	Q	A	K	K	L	T	T	D	A	S	E	W	E	V	L	L	D	G	E	K	V	G	E	V	K	W	S	L	V	G	E	H	N	M	H	N	G	L	M	A	I	A	A	A	R	H	V	G	V	A	P	A	D	A	A	N	A	L	G	S	F	I	N	A	R	R	R	L	E	L	R
Query Conservation		.	.	.
Alig confidence		.	.	.
Template Conservation
Template Sequence		F	S	E	Q	A	D	Y	R	I	E	D	Y	E	Q	T	G	F	Q	G	H	Y	T	V	I	C	P	N	N	E	R	I	N	V	L	L	N	V	P	G	K	H	N	A	L	N	A	T	A	A	L	A	V	A	K	E	E	G	I	A	N	E	A	I	L	E	A	L	A	D	F	Q	G	A	G	R	R	F	D	Q	L
Template Known Secondary structure		S	S	T	T		S										T	T									T	T	S								S	S		S																T	T													T				S	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
		319	320					.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.																																																																					.	.	.	.	.	.
Query SS confidence				.	.	.	.																																																																					.	.	.	.	.	.
Query Sequence		G	E	.	.	.	.	A	N	G	V	T	V	Y	D	D	F	A	H	H	P	T	A	I	L	A	T	L	A	A	L	R	G	K	V	G	G	T	A	R	I	I	A	V	L	E	P	R	S	N	T	M	K	M	G	I	C	K	D	D	L	A	P	S	L	G	R	A	D	E	V	F	L	L	Q	.	.	.	.	.	.
Query Conservation				.	.	.	.																																																																					.	.	.	.	.	.
Alig confidence				.	.	.	.																																											.	.																									.	.	.	.	.	.
Template Conservation																																																		.	.
Template Sequence		G	E	F	I	R	P	N	G	K	V	R	L	V	D	D	Y	G	H	H	P	T	E	V	G	V	T	I	K	A	A	R	E	G	W	G	D	K	R	I	V	M	I	F	Q	P	H	R	Y	.	.	S	R	T	R	D	L	F	D	D	F	V	Q	V	L	S	Q	V	D	A	L	I	M	L	D	V	Y	A	A	G	E
Template Known Secondary structure							T	T												S															S	S	S										B			.	.															T	T	S	S								B		T	T
Template Predicted Secondary structure																																																		.	.
Template SS confidence
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.			.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.
					389	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.		.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.
Predicted Secondary structure		.	.	.																	.
Query SS confidence		.	.	.																	.
Query Sequence		.	.	.	P	A	H	I	P	W	Q	V	A	E	V	A	E	A	C	V	.	Q	P	A	H	W	S	G	D	V	D	T	L	A	D	M	V	V	K	T	A	Q	P	G	D	H	I	L	V	M	S	N	G	G	F	G	G	I	H	Q	K	L	L	D	G	L	A	K
Query Conservation		.	.	.																	.
Alig confidence		.	.	.																	.
Template Conservation
Template Sequence		A	P	I	V	G	A	D	S	K	S	L	C	R	S	I	R	N	L	G	K	V	D	P	I	L	V	S	D	T	S	Q	L	G	D	V	L	D	Q	I	I	Q	D	G	D	L	I	L	A	Q	G	A	G	S	V	S	K	I	S	R	G	L	A	E	S	W	K	N
Template Known Secondary structure					T	T		S												T	S									G	G	G											T	T								S	S	S
Template Predicted Secondary structure
Template SS confidence
		409	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.