Return to main results Retrieve Phyre Job Id

Job DescriptionP37773
Confidence100.00%DateThu Jan 5 11:57:40 GMT 2012
Rank10Aligned Residues406
% Identity18%Templatec1gg4A_
PDB info PDB header:ligaseChain: A: PDB Molecule:udp-n-acetylmuramoylalanyl-d-glutamyl-2,6- PDBTitle: crystal structure of escherichia coli udpmurnac-tripeptide2 d-alanyl-d-alanine-adding enzyme (murf) at 2.3 angstrom3 resolution
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   16...20.........30. ........40.........50.... .....60.........70.........80....
Predicted Secondary structure 


.........









..












Query SS confidence 















. . . . . . . . .






















. .





























Query Sequence  LAMLARQLGHEVTGSD. . . . . . . . . ANVYPPMSTLLEKQGIELIQGYD. . ASQLEPQPDLVIIGNAMTRGNPCVEAVLEK
Query Conservation 

  
   
  
   
.........          
   

    
  ..        
 

 



    
    
   
Alig confidence 















.........


















.


..






















.......
Template Conservation 
  
           
  
  
  


 
  
 



  
   
.
   
  
   

  

         
 .......
Template Sequence  LSQLTDILNGELQGADITLDAVTTDTRKLTPGCLFVALKGERFD. AHDFADQAKAGGAGALLVSRPLDIDLPQ. . . . . . .
Template Known Secondary structure  TTS


S
S
GGG

TT


B
SS
B.TTTTTT

SS

S
SS
.......
Template Predicted Secondary structure 




















.










.......
Template SS confidence 















































































   6...10.........20.........30.........40......... 50.........60.........70.......
 
   85....90.........100... ......110.........120.........130.........140......... 150.....
Predicted Secondary structure 





.....



















....



Query SS confidence 


















. . . . .













































. . . .





Query Sequence  NIPYMSGPQWLHDFVLRDR. . . . . WVLAVAGTHGKTTTAGMATWILEQCGYKPGFVIGGVPGNFEVSAHL. . . . GESDFF
Query Conservation   
 
    
 
        ..... 

 









  

  

   
       
            ....      
Alig confidence  .

















.....



























.
















....





Template Conservation  .
 
 
   

  

          

 









   
  

   
  .    
      
               
Template Sequence  . LIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEXTAAILSQCGNT. LYTAGNLNNDIGVPXTLLRLTPEYDYA
Template Known Secondary structure  .S
S


SS
TTTS
.

TT

STTTT

TT
S
Template Predicted Secondary structure  .
















.













Template SS confidence 















































































   78.80.........90.........100.........110.........120........ .130.........140.........150.....
 
   156...160.........170.........180.........190.........200.........210.........220.........230.....
Predicted Secondary structure 


























Query SS confidence 















































































Query Sequence  VIEADEYDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPENDINLKQTMAMGCW
Query Conservation 
 
                   
 






  



  

 
     
  
          
   

            
Alig confidence 

















..










........








































Template Conservation 
 
               ..      
 

 ........   
     
  
          
 
 

            
Template Sequence  VIELGANHQGEIAWTVSL. . TRPEAALVNNL. . . . . . . . ASLAGVAKAKGEIFSGLPENGIAIXNADNNDWLNWQSVIGS
Template Known Secondary structure 


SSSS..

S


........

GGGGG

TT
TTB

TT
Template Predicted Secondary structure 







..




........













Template SS confidence 















































































   156...160.........170... ......180.... .....190.........200.........210.........220.....
 
   236...240... ......250.........260.........270.........280.........290.........300.........310
Predicted Secondary structure 


.....



















Query SS confidence 







. . . . .


































































Query Sequence  SEQELVGE. . . . . QGHWQAKKLTTDASEWEVLLDGEKVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFIN
Query Conservation          .....                             
 
 
 

  




 
    


    
   
  
  
Alig confidence 







.....
























.








































Template Conservation                                        .   
 
 
 

  






 
  


  
 
   
     
Template Sequence  RKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSV. DVLLPLPGRHNIANALAAAALSXSVGATLDAIKAGLANLKA
Template Known Secondary structure  S
SS
TT
SB
SSSTT.
SSSTTT

TT


Template Predicted Secondary structure 














.












Template SS confidence 















































































   234.....240.........250.........260.........270. ........280.........290.........300.........310..
 
   311........320......... 330.........340.........350.........360.........370.........380 .......
Predicted Secondary structure 







.















..

Query SS confidence 


















.


















































. .






Query Sequence  ARRRLELRGEANGVTVYDD. FAHHPTAILATLAALRGKVGGTARIIAVLEPRSNTMKMGICKDDLAPSLGR. . ADEVFLL
Query Conservation     
 
 
    
   


. 
 

 
  
 
  
         



                    
  .. 
 


 
Alig confidence 


















.

















..






























..






Template Conservation 
 

 
 
       

 
  



 
    
  
   ..      
       
         
         
 

  
Template Sequence  VPGRLFPIQLAENQLLLDDSYNANVGSXTAAVQVLAEX. . PGYRVLVVGDXAELGAESEACHVQVGEAAKAAGIDRVLSV
Template Known Secondary structure 
TTSSTT

S


S..SS





TTT
S
Template Predicted Secondary structure 













..













Template SS confidence 















































































   313......320.........330.........340.........350 .........360.........370.........380.........390
 
   388.390.........400.........410.........420.........430.........440.........450
Predicted Secondary structure 



















Query SS confidence 






























































Query Sequence  QPAHIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILVMSNGGFGGIHQKLLDGLA
Query Conservation                             


      
  

 


 
 

       
   
 
Alig confidence 



......




















































Template Conservation 

  ......  
              


          
   

 



    
 

  
 
Template Sequence  GKQS. . . . . . HAISTASGVGEHFADKTALITRLKLLIAEQQVITILVKGSRSAAXEEVVRALQ
Template Known Secondary structure  SSST......TTS
SS
SS

GGGTT
Template Predicted Secondary structure 


......















Template SS confidence 






























































   391... .....400.........410.........420.........430.........440.......
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions