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Job DescriptionP37773
Confidence100.00%DateThu Jan 5 11:57:40 GMT 2012
Rank9Aligned Residues399
% Identity17%Templatec1e8cB_
PDB info PDB header:ligaseChain: B: PDB Molecule:udp-n-acetylmuramoylalanyl-d-glutamate--2,6- PDBTitle: structure of mure the udp-n-acetylmuramyl tripeptide2 synthetase from e. coli
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   28.30.........40.........50.... .....60.........70.........80.........90.........100
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Query Sequence  TGSDANVYPPMSTLLEKQGIELIQGYD. . ASQLEPQPDLVIIGNAMTRGNPCVEAVLEKNIPYMSGPQWLHDFVL. . . . .
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Template Sequence  XTLDSRVAAAGDLFVAVVGHQ. ADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREXHGVPVIYLSQLNERLSALAGRFYH
Template Known Secondary structure  S
GGG

TT

B
SS.
BGGGGTT
S
TTT

TT
TTTTTT
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   24.....30.........40.... .....50.........60.........70.........80.........90.........100..
 
   101........110.........120.........130.........140.........150 ........
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Query Sequence  . . . RDRWVLAVAGTHGKTTTAGMATWILEQCGYKPGFVIGGVPGNFEVSAHLG. . . . . . . . . . . . . . . . . . . ESDFFVIE
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Template Sequence  EPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGEISAVXGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAXE
Template Known Secondary structure 
GGGSSSSS
TT

STT
BTT

B

S
SS

TT

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   103......110.........120.........130.........140.........150.........160.........170.........180..
 
   159160.........170.........180.........190.........200.........210.........220.........230........
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Query Sequence  ADEYDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQ
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Template Sequence  V. . . . SSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDXEHYEAAWLLYSE. . HHCGQAIINADDEVGRRWLAKLPDAVA
Template Known Secondary structure 
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TTTTTT
B
S



S


S

S..SB

TTSTT
TT
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   183 ......190.........200.........210.........220......... 230.........240.........250......
 
   239240 .........250.........260.........270.........280.........290.........300.........
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Query Sequence  EL. . . . . . . . . VGEQGHWQAKKLTTDASEWEVLLDGEKVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFI
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Template Sequence  VSXEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDG. EIESHLXGAFNVSNLLLALATLLALGYPLADLLKTAARLQ
Template Known Secondary structure  SSS


TTT
S
SS
TT

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S
STT

GGG

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   258.260.........270.........280.........290...... ...300.........310.........320.........330......
 
   310.........320.........330.........340.........350.........360.........370.........380.........
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Query Sequence  NARRRLELRGEANGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEPRSNTMKMGICKDDLAPSLGRADEVFLLQP
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Template Sequence  PVCGRXEVFTAPGKPTVVVDYAHTPDALEKALQAARLHC. AGKLWCVFGCGGDRDKGKRPLXGAIAE. . EFADVAVVTDD
Template Known Secondary structure 

TTSS

TTS



ST
.SS



SSS
ST..
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S
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   337..340.........350.........360.........370..... ....380.........390.........400.. .......410...
 
   390.........400.. .......410.........420.........430.......
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Query Sequence  AHIPWQVAEVAEA. . . . . . CVQPAHWSGDVDTLADMVVKTAQPGDHILVMSNGG
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Template Sequence  NPRTEEPRAIINDILAGXLDAGHAKVXEGRAEAVTCAVXQAKENDVVLVAGKGH
Template Known Secondary structure 

BTS
TTSS
TTSS
S
S
TT
S
TT
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   414.....420.........430.........440.........450.........460.......
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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