Job Description P37773 Confidence 97.10% Date Thu Jan 5 11:57:40 GMT 2012 Rank 104 Aligned Residues 131 % Identity 18% Template c1djnB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:trimethylamine dehydrogenase; PDBTitle: structural and biochemical characterization of recombinant wild type2 trimethylamine dehydrogenase from methylophilus methylotrophus (sp.3 w3a1) Resolution 2.20 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.																											.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Query SS confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Query Sequence		R	I	H	I	L	G	I	C	G	T	F	M	G	G	L	A	M	L	A	R	Q	L	G	H	E	V	T	G	S	D	A	N	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	P	P	M	S	T	L	L	E	K	Q	G	I	E	L	I	Q	G	Y	D	.
Query Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Alig confidence																.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Template Conservation																.
Template Sequence		S	V	L	I	V	G	A	G	P	S	G	S	E	A	.	A	R	V	L	M	E	S	G	Y	T	V	H	L	T	D	T	A	E	K	I	G	G	H	L	N	Q	V	A	A	L	P	G	L	G	E	W	S	Y	H	R	D	Y	R	E	T	Q	I	T	K	L	L	K	K	N	K	E	S	Q	L	A	L	G	Q	K	P
Template Known Secondary structure									S							.							T	T								S	S	S	S	T	T	T	T					T	T	S	T	T		G	G	G	G																T		T	T						S
Template Predicted Secondary structure																.
Template SS confidence
		391	.	.	.	.	.	.	.	.	400	.	.	.	.		.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.
					55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.									.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
Predicted Secondary structure		.	.	.																																		.	.	.	.	.	.	.	.
Query SS confidence		.	.	.																																		.	.	.	.	.	.	.	.
Query Sequence		.	.	.	A	S	Q	L	E	P	Q	P	D	L	V	I	I	G	N	A	M	T	R	G	N	P	C	V	E	A	V	L	E	K	N	I	P	.	.	.	.	.	.	.	.	Y	M	S	G	P	Q	W	L	H	D	F	V	L	R	D	R	W	V	L	A	V	A	G	T	H	G	K	T	T	T	A	G	M	A	T	W
Query Conservation		.	.	.																																		.	.	.	.	.	.	.	.
Alig confidence		.	.	.																																		.	.	.	.	.	.	.	.																											.	.
Template Conservation																																																																								.	.
Template Sequence		M	T	A	D	D	V	L	Q	Y	G	A	D	K	V	I	I	A	T	G	A	R	W	N	T	D	G	T	N	C	L	T	H	D	P	I	P	G	A	D	A	S	L	P	D	Q	L	T	P	E	Q	V	M	D	G	K	K	K	I	G	K	R	V	V	I	L	N	A	D	T	Y	.	.	F	M	A	P	S	L	A	E
Template Known Secondary structure									T	S			S												S	S				T	T	T	S	S			T	T			T	T	S	T	T										T		S				S										S	.	.	S
Template Predicted Secondary structure																																																																								.	.
Template SS confidence
		470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.			540	.	.	.	.	.	.	.
		124	.	.	.	.	.	130	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L	E	Q	C	G	Y	K	P	G	F	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	L	A	T	A	G	H	E	V	T	I	V
Template Known Secondary structure						T	T
Template Predicted Secondary structure
Template SS confidence
		548	.	550	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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