Job Description P75793 Confidence 100.00% Date Thu Jan 5 12:14:12 GMT 2012 Rank 3 Aligned Residues 772 % Identity 32% Template c2f3oB_ PDB info PDB header:unknown function Chain: B: PDB Molecule:pyruvate formate-lyase 2; PDBTitle: crystal structure of a glycyl radical enzyme from archaeoglobus2 fulgidus Resolution 2.90 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure
Query SS confidence
Query Sequence		D	R	I	K	A	H	K	N	A	L	V	H	I	V	K	P	P	V	C	T	E	R	A	Q	H	Y	T	E	M	Y	Q	Q	H	L	D	K	P	I	P	V	R	R	A	L	A	L	A	H	H	L	A	N	R	T	I	W	I	K	H	D	E	L	I	I	G	N	Q	A	S	E	V	R	A	A	P	I	F	P	E	Y
Query Conservation
Alig confidence											.			.
Template Conservation											.			.
Template Sequence		D	R	I	E	K	L	I	K	K	.	V	S	.	K	P	A	R	L	S	V	E	R	C	R	L	Y	T	E	S	M	K	Q	T	E	G	E	P	M	I	I	R	Q	A	K	A	L	K	H	V	L	E	N	I	P	I	Q	I	L	D	S	E	L	I	V	G	T	M	L	P	N	P	P	G	A	I	I	F	P	E	G
Template Known Secondary structure										T	.	T	T	.	S																			S	T	T	S																	S						T	T		S	S				S	S	S	S	S	S						T	T	T
Template Predicted Secondary structure											.			.
Template SS confidence
		4	.	.	.	.	.	10	.	.		.	.		.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.		.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																	.
Query SS confidence																																	.
Query Sequence		T	V	S	W	I	E	K	E	I	D	D	L	A	D	R	P	G	A	G	F	A	V	S	E	E	N	K	R	V	L	H	.	E	V	C	P	W	W	R	G	Q	T	V	Q	D	R	C	Y	G	M	F	T	D	E	Q	K	G	L	L	A	T	G	I	I	K	A	E	G	N	M	T	S	G	D	A	H	L	A	V	N
Query Conservation																																	.
Alig confidence																																	.																																		.	.
Template Conservation																																																																			.	.
Template Sequence		V	G	L	R	I	I	N	E	L	D	S	L	P	N	R	E	T	N	R	L	M	V	D	E	E	D	A	K	V	L	R	E	E	I	A	P	Y	W	Q	R	K	T	I	E	A	F	A	F	P	L	M	P	D	I	M	Q	I	L	Y	T	G	S	V	F	V	.	.	L	T	E	I	A	G	I	S	H	V	A	V	N
Template Known Secondary structure		T	T					T	T	T	T	T	G	G	G		S	S	S			B			S								T	T						T	T		S						G	G	G	S									T	S	S	S			.	.			G	G	G
Template Predicted Secondary structure																																																																			.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.			.	.	.	150	.	.	.	.	.	.	.	.	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	P	L	L	L	E	K	G	L	D	G	L	R	E	E	V	A	E	R	R	S	R	I	N	L	T	V	L	E	D	L	H	G	E	Q	F	L	K	A	I	D	I	V	L	V	A	V	S	E	H	I	E	R	F	A	A	L	A	R	E	M	A	A	T	E	T	R	E	S	R	R	D	E	L	L	A	M	A	E	N
Query Conservation
Alig confidence																																																																			.
Template Conservation																																																																			.
Template Sequence		Y	P	Y	L	L	R	R	G	F	R	W	F	L	E	E	S	E	R	R	I	R	A	L	E	E	S	G	V	Y	E	G	E	K	Y	S	F	Y	Q	A	A	K	I	V	S	E	A	V	I	N	Y	G	L	R	Y	S	K	L	A	E	E	L	A	E	S	E	.	D	G	E	R	R	E	E	L	L	K	I	A	E	I
Template Known Secondary structure							T	T																			T	T	S																																			T	T	S	.
Template Predicted Secondary structure																																																																			.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.		.	.	.	.	.	230	.	.	.	.	.	.	.	.
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	D	L	I	A	H	Q	P	P	Q	T	F	W	Q	A	L	Q	L	C	Y	F	I	Q	L	I	L	Q	I	E	S	N	G	H	S	V	S	F	G	R	M	D	Q	Y	L	Y	P	Y	Y	R	R	D	V	E	L	N	Q	T	L	D	R	E	H	A	I	E	M	L	H	S	C	W	L	K	L	L	E	V	N	K	I
Query Conservation
Alig confidence																																																										.
Template Conservation																																																										.
Template Sequence		C	R	K	V	P	A	E	K	P	E	T	F	W	E	A	V	Q	F	V	W	L	V	Q	S	A	L	H	Q	E	N	Y	E	Q	A	I	S	M	G	R	I	D	Q	Y	L	Y	P	F	F	K	K	D	I	G	E	G	R	.	I	N	R	E	L	A	F	D	I	L	A	N	L	W	I	K	T	N	E	I	V	P	A
Template Known Secondary structure					T	T	T	S				S																			S		S	S						S					S								T	T	T	T	S	.	S																T	T	S	B
Template Predicted Secondary structure																																																										.
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.		.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	S	G	S	H	S	K	A	S	A	G	S	P	L	Y	Q	N	V	T	I	G	G	Q	N	L	V	D	G	Q	P	M	D	A	V	N	P	L	S	Y	A	I	L	E	S	C	G	R	L	R	S	T	Q	P	N	L	S	V	R	Y	H	A	G	M	S	N	D	F	L	D	A	C	V	Q	V	I	R	C	G	F	G
Query Conservation
Alig confidence																											.	.	.
Template Conservation																											.	.	.
Template Sequence		F	D	S	L	L	E	Q	Y	F	S	G	Q	A	T	N	Q	A	V	T	I	G	G	C	D	I	.	.	.	Y	G	N	D	A	T	N	E	L	T	Y	L	M	L	E	V	T	D	R	L	R	L	R	Q	P	N	V	H	V	R	I	N	K	G	S	P	E	S	F	L	K	R	L	A	E	A	I	S	S	G	C	N
Template Known Secondary structure										S	T	T	T											B		T	.	.	.	T	S		B																			S		S								T	T	S														T	T
Template Predicted Secondary structure																											.	.	.
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.				.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
		410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	P	A	F	N	N	D	E	I	V	I	P	E	F	I	K	L	G	I	E	P	Q	D	A	Y	D	Y	A	A	I	G	C	I	E	T	A	V	G	G	K	W	G	Y	R	C	T	G	M	S	F	I	N	F	A	R	V	M	L	A	A	L	E	G	G	H	D	A	T	S	G	K	V	F	L	P	Q	E	K	A	L
Query Conservation
Alig confidence																																										.																																						.	.
Template Conservation																																										.																																						.	.
Template Sequence		N	L	A	L	F	F	D	D	A	A	V	K	A	L	K	N	A	E	V	D	D	R	D	A	L	N	Y	T	T	D	G	C	V	E	I	A	P	F	G	N	.	S	F	T	S	S	D	A	A	L	I	N	V	A	K	A	L	E	Y	A	L	N	E	G	V	D	L	Q	F	G	Y	E	F	G	A	K	T	E	.	.
Template Known Secondary structure																		T	T								T					T	T	T					S	S	S	.					T	T	S														T	T	T	B		T	T	T			B		S					.	.
Template Predicted Secondary structure																																										.																																						.	.
Template SS confidence
		395	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.		.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.
		490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	G	N	F	N	N	F	D	E	V	M	D	A	W	D	T	Q	I	R	Y	Y	T	R	K	S	I	E	I	E	Y	V	V	D	T	M	L	E	E	N	V	H	D	I	L	C	S	A	L	V	D	D	C	I	E	R	A	K	S	I	K	Q	G	G	A	K	Y	D	W	V	S	G	L	Q	V	G	I	A	N	L
Query Conservation
Alig confidence		.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	K	P	K	F	L	E	D	L	L	E	K	L	R	E	Q	V	S	H	I	V	K	L	V	V	R	G	S	N	V	L	S	Y	A	N	A	E	V	K	P	T	P	L	L	S	L	C	V	E	D	C	F	E	K	G	V	D	V	S	R	G	G	A	R	Y	N	F	T	G	I	Q	A	V	G	I	A	D	V
Template Known Secondary structure		.	.	.				S																																										T	S	T	T					T			T	T	T	T		S	S
Template Predicted Secondary structure		.	.	.
Template SS confidence
					472	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.
		570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	N	S	L	A	A	V	K	K	L	V	F	E	Q	G	A	I	G	Q	Q	Q	L	A	A	A	L	A	D	D	F	D	G	L	T	H	E	Q	L	R	Q	R	L	I	N	G	A	P	K	Y	G	N	D	D	D	T	V	D	T	L	L	A	R	A	Y	Q	T	Y	I	D	E	L	K	Q	Y	H	N	P	R	Y	G
Query Conservation
Alig confidence													.	.																				.	.											.																																		.	.
Template Conservation													.	.																				.	.											.																																		.	.
Template Sequence		G	D	S	L	V	A	I	E	G	A	L	.	.	N	A	G	Y	S	M	D	D	I	V	E	A	C	R	K	N	F	V	G	.	.	Y	E	K	L	H	K	L	L	L	Q	.	S	P	K	Y	G	N	D	D	D	A	A	D	K	Y	T	K	M	V	L	E	W	Y	C	E	E	V	N	R	H	R	N	F	R	.	.
Template Known Secondary structure													.	.		T	T												T	T	T	S	S	.	.											.	S			T	T	S	S																					T		B		T	T	.	.
Template Predicted Secondary structure													.	.																				.	.											.																																		.	.
Template SS confidence
		549	550	.	.	.	.	.	.	.	.	.			560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.			.	580	.	.	.	.	.	.	.	.		.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.
		650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	G	P	V	G	G	N	Y	Y	A	G	T	S	S	I	S	A	N	V	P	F	G	A	Q	T	M	A	T	P	D	G	R	K	A	H	T	P	L	A	E	G	A	S	P	A	S	G	T	D	H	L	G	P	T	A	V	I	G	S	V	G	K	L	P	T	A	A	I	L	G	G	V	L	L	N	Q	K	L	N	P
Query Conservation
Alig confidence		.	.	.	.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	G	G	K	F	A	A	G	C	Y	P	M	T	T	N	V	G	F	G	F	F	T	S	A	L	P	S	G	R	K	S	G	E	P	L	N	P	G	V	S	P	S	T	G	M	D	R	E	G	V	T	A	V	I	N	S	A	S	K	L	S	Y	E	N	L	P	N	G	A	S	L	T	I	N	L	S	S
Template Known Secondary structure		.	.	.	.	S	S									T	T													T	T	S			T	T						T	T	S			T	T				S		S								T	T	S		G	G	G		T	T
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						622	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.
		730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	L	E	N	E	S	D	K	Q	K	L	M	I	L	L	R	T	F	F	E	V	H	K	G	W	H	I	Q	Y	N	I	V	S	R	E	T	L	L	D	A	K	K	H	P	D	Q	Y	R	D	L	V	V	R	V	A	G	Y	S	A	F	F	T	A	L	S	P	D	A	Q	D	D	I	I	A	R	T	E	H	M
Query Conservation
Alig confidence					.																		.
Template Conservation					.																		.
Template Sequence		D	V	L	.	G	E	K	G	D	A	V	I	E	A	L	I	K	S	S	M	E	.	L	G	V	M	H	V	Q	F	N	I	L	K	E	D	L	L	R	K	A	Q	Q	E	P	E	K	Y	R	W	L	L	V	R	V	A	G	W	S	A	Y	F	V	E	L	S	R	P	V	Q	E	E	V	I	R	R	I	S	C	R
Template Known Secondary structure					.		S																.	T	T		S																T	T		G	G	G	G	T	T						S	S	S				G	G	G	S										T	T		B
Template Predicted Secondary structure					.																		.
Template SS confidence
		698	.	700		.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.		.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.
		810
Predicted Secondary structure
Query SS confidence
Query Sequence		L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		776