 |
Job Description | P75793 | Confidence | 10.76% | Date | Thu Jan 5 12:14:12 GMT 2012 |
Rank | 87 | Aligned Residues | 69 |
% Identity | 14% | Template | c2d2rA_ |
PDB info |
PDB header:transferase | Chain: A: PDB Molecule:undecaprenyl pyrophosphate synthase; |
PDBTitle: crystal structure of helicobacter pylori undecaprenyl pyrophosphate2 synthase
|
Resolution | 1.88 Å |
|
 |
  |   |
729 | 730 | . | . | . | . | . | . | . | . | . | 740 | . | . | . | . | . | . | . | . | . | 750 | . | . | . | . | . | . | . | . | . | 760 | . | . | . | |
|
|
|
|
|
|
|
. | . | . | . | . | . | 770 | . | . | . | . | . | . | . | . | . | 780 | . | . | . | . | . | . | . | . | . | 790 | . | . | . | . | . | . | . | . | . | 800 |
Predicted Secondary structure |   |
 |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
| . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|  |  |  |  |  |  |  |
|
|  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
P | A | T | L | E | N | E | S | D | K | Q | K | L | M | I | L | L | R | T | F | F | E | V | H | K | G | W | H | I | Q | Y | N | I | V | S | . |
. |
. |
. |
. |
. |
. |
. |
R | E | T | L | L | D | A | K | K | H | P | D | Q | Y | R | D | L | V | V | R | V | A | G | Y | S | A | F | F | T | A | L | S | P | D | A | Q | D |
Query Conservation |   |
|   |   |   |   |   |   |   |
|   |   |   |
|   |   |
|
|
|
|
|
|   |   |   |
|
|   |
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |   |   |
|
|   |   |
|
|
|   |
|
|   |
|   |   |
|
|
|
|
|
|
|
|
|
|   |
|
|   |
|   |   |   |   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |
|
|   |   |
|   |   |   |
|   |   |
|
|   |
|
|   |   |   | . |
|
|   |   |
|
|
|
|   |
|
|
|   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . |   |
|
|
|   |   |   |
| . | . | . |
|   |   |   |
|
|   |   |
|   |   |
Template Sequence |   |
A | R | A | Y | G | H | K | K | G | V | K | T | L | K | D | I | T | I | W | C | A | N | H | . |
K | L | E | C | L | T | L | Y | A | F | E | V | D | F | L | M | K | M | L | K | K | Y | L | K | D | E | R | S | T | Y | L | D | N | . |
N | I | R | F | R | A | I | G | . |
. |
. |
D | L | E | G | F | S | K | E | L | R | D |
Template Known Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | . | T |
| S |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | . | T |
|  |  |  |  |  | S | . | . | . |
| G | G | G | S |
|  |  |  |  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| . |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| . |
|
|  |  |  |  |  |
| . | . | . |
|
|  |  |
|
|  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
25 | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | |
. | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | |
. | . | . | . | . | . | . | . | |
|
|
. | 90 | . | . | . | . | . | . | . | . | . |
  |
  |   |
801 | . |
Predicted Secondary structure |   |
 |  |
Query SS confidence |   |
|
|
Query Sequence |   |
D | I |
Query Conservation |   |
|
|
Alig confidence |   |
|
|
Template Conservation |   |
  |   |
Template Sequence |   |
T | I |
Template Known Secondary structure |   |
 |  |
Template Predicted Secondary structure |   |
 |  |
Template SS confidence |   |
|
|
  |   |
110 | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|