Job Description P03835 Confidence 99.95% Date Thu Jan 5 10:58:03 GMT 2012 Rank 1 Aligned Residues 354 % Identity 14% Template d1musa_ SCOP info Ribonuclease H-like motif Ribonuclease H-like Transposase inhibitor (Tn5 transposase) Resolution 1.90

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	E	L	I	S	R	C	L	A	E	S	G	T	V	T	L	R	K	R	R	L	P	L	E	M	M	V	W	C	I	V	G	M	A	L	E	R	K	E	P	L	H	Q	I	V	N	R	L	D	I	M	L	P	G	N	R	P	F	V	A	P	S	A	V	I	Q	A	R	Q	R	L	G	S	E	A	V	R	R	V	F
Query Conservation
Alig confidence																						.	.	.	.																																										.	.	.	.	.	.
Template Conservation																						.	.	.	.																																										.	.	.	.	.	.
Template Sequence		A	D	W	A	K	S	V	F	S	S	A	A	L	G	D	P	R	R	T	A	.	.	.	.	R	L	V	N	V	A	A	Q	L	A	K	Y	S	G	K	S	I	T	I	S	S	E	G	S	K	A	A	Q	E	G	A	Y	R	F	I	R	N	P	N	V	S	.	.	.	.	.	.	A	E	A	I	R	K	A	G	A
Template Known Secondary structure										T	T				S	S						.	.	.	.												T	T	T	S						T	T	T													T		T	T			.	.	.	.	.	.
Template Predicted Secondary structure																						.	.	.	.																																										.	.	.	.	.	.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.					30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70							.	.	.	.	.	.	.	.	.
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure																																																																										.	.	.	.	.	.	.	.
Query SS confidence																																																																										.	.	.	.	.	.	.	.
Query Sequence		T	K	T	A	Q	L	W	H	N	A	T	P	H	P	H	W	C	G	L	T	L	L	A	I	D	G	V	F	W	R	T	P	D	T	P	E	N	D	A	A	F	P	R	Q	T	H	A	G	N	P	A	L	Y	P	Q	V	K	M	V	C	Q	M	E	L	T	S	H	L	L	T	A	A	.	.	.	.	.	.	.	.
Query Conservation																																																																										.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.																																			.	.																		.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.																																			.	.
Template Sequence		M	Q	T	V	K	L	A	Q	E	F	P	E	.	.	.	.	.	.	.	L	L	A	I	E	D	T	T	S	L	S	Y	R	H	Q	V	A	E	E	L	G	K	L	G	S	I	Q	K	A	S	R	G	W	W	.	.	V	H	S	V	L	L	L	E	A	T	T	F	R	T	V	G	L	L	H	Q	E	W	W	M	R
Template Known Secondary structure									T	T		S		.	.	.	.	.	.	.														S	G	G	G	G	G	S	B		S	S	S	T	T		S						.	.									T	T	T
Template Predicted Secondary structure														.	.	.	.	.	.	.																																			.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.								.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.			.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
				181	.	.	.	.	.	.	.	.	190								.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure		.	.											.	.	.	.	.	.	.																																																									.	.	.	.	.
Query SS confidence		.	.											.	.	.	.	.	.	.																																																									.	.	.	.	.
Query Sequence		.	.	A	F	G	T	M	K	N	S	E	N	.	.	.	.	.	.	.	E	L	A	E	Q	L	I	E	Q	T	G	D	N	T	L	T	L	M	D	K	G	Y	Y	S	L	G	L	L	N	A	W	S	L	A	G	E	H	R	H	W	M	I	P	L	R	K	G	A	Q	Y	E	E	I	R	K	L	.	.	.	.	.
Query Conservation		.	.											.	.	.	.	.	.	.																																																									.	.	.	.	.
Alig confidence		.	.											.	.	.	.	.	.	.																																						.	.																		.	.	.	.	.
Template Conservation																																																										.	.
Template Sequence		P	D	D	P	A	D	A	D	E	K	E	S	G	K	W	L	A	A	A	A	T	S	R	L	R	M	G	S	M	M	S	N	V	I	A	V	C	D	R	E	A	D	I	H	A	Y	L	Q	D	K	L	A	H	N	E	R	.	.	F	V	V	R	S	K	H	P	R	K	D	V	E	S	G	L	Y	L	Y	D	H	L
Template Known Secondary structure			S	S	G	G	G		S	S		G	G	G														G	G	G	G	G	G							G	G	G												T	T			.	.							S			B		T	T	T		S	B
Template Predicted Secondary structure																																																										.	.
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.			.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
																												247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.					.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	K	G	D	H	L	V	K	L	K	T	S	P	Q	A	R	K	K	W	P	G	L	G	N	E	V	T	A	R	L	L	T	V	T	R	.	.	.	.	K	G	K	V	C	H	L	L	T	S	M	T	D	A	M
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.
Template Conservation
Template Sequence		K	N	Q	P	E	L	G	G	Y	Q	I	S	I	P	Q	K	G	V	V	D	K	R	G	K	R	K	N	R	P	A	R	K	A	S	L	S	L	R	S	G	R	I	T	L	K	Q	G	N	I	T	L	N	A	V	L	A	E	E	I	N	P	P	K	G	E	T	P	L	K	W	L	L	L	T	S	E	P	V	E	S
Template Known Secondary structure			T	S																		S	S																							T	G	G	G												S			S	S	S										S	S			S	S
Template Predicted Secondary structure
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	F	P	G	G	E	M	G	D	L	Y	S	H	R	W	E	I	E	L	G	Y	R	E	I	K	Q	T	M	Q	R	S	R	L	T	L	R	S	K	K	P	E	L	V	E	Q	E	L	W	G	V	L	L	A	Y	N	L	V	R	Y	Q	M	I	K	M	A	E	H	L	K	G	Y	W	P	N	Q	L	S	F	S	E
Query Conservation
Alig confidence																																		.	.														.	.																												.
Template Conservation																																		.	.														.	.																												.
Template Sequence		L	A	Q	A	L	R	V	I	D	I	Y	T	H	R	W	R	I	E	E	F	H	K	A	W	K	T	G	A	G	A	E	R	.	.	Q	R	M	E	K	P	D	N	L	E	R	M	V	.	.	S	I	L	S	F	V	A	V	R	L	L	Q	L	R	E	S	F	T	P	P	S	Q	S	A	E	T	V	.	L	T	P
Template Known Secondary structure														T	T												T	T	T		G	G	G	.	.				S	S									.	.																							B	G	G	G	T	.	S
Template Predicted Secondary structure																																		.	.														.	.																												.
Template SS confidence
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340			.	.	.	.	.	.	.	.	.	350	.	.	.			.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380		.	.	.
		377	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	C	G	M	V	M	R	M	L	M	T	L	Q	G	A	S	P	G	R	I	P	E	L	M	R	D	L	A	S	M	G	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	E	C	Q	L	L	G	Y	L	D	K	G	K	R	K	R	K	E	K	A	G	S	L	Q	W	A	Y	M	A	I	A	R
Template Known Secondary structure												T	T	T			T	T	S		T	T	B
Template Predicted Secondary structure
Template SS confidence
		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.