Job Description P42632 Confidence 100.00% Date Thu Jan 5 12:02:00 GMT 2012 Rank 5 Aligned Residues 655 % Identity 24% Template c2f3oB_ PDB info PDB header:unknown function Chain: B: PDB Molecule:pyruvate formate-lyase 2; PDBTitle: crystal structure of a glycyl radical enzyme from archaeoglobus2 fulgidus Resolution 2.90 Å

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		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.		.	.	.	.	.											.	.	.	140	.	.	.	.	.	.		.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure																																									.						.	.	.	.	.	.	.	.	.	.											.
Query SS confidence																																									.						.	.	.	.	.	.	.	.	.	.											.
Query Sequence		Y	I	N	Q	P	L	E	K	I	V	G	L	Q	T	D	A	P	L	K	R	A	L	H	P	F	G	G	I	N	M	I	K	S	S	F	H	A	Y	G	.	R	E	M	D	S	.	.	.	.	.	.	.	.	.	.	E	F	E	Y	L	F	T	D	L	R	.	K	T	H	N	Q	G	V	F	D	V	Y	S	P	D
Query Conservation																																									.						.	.	.	.	.	.	.	.	.	.											.
Alig confidence				.																																					.						.	.	.	.	.	.	.	.	.	.											.
Template Conservation				.
Template Sequence		Q	I	.	L	D	S	E	L	I	V	G	T	M	L	P	N	P	P	G	A	I	I	F	P	E	G	V	G	L	R	I	I	N	E	L	D	S	L	P	N	R	E	T	N	R	L	M	V	D	E	E	D	A	K	V	L	R	E	E	I	A	P	Y	W	Q	R	K	T	I	E	A	F	A	F	P	L	M	P	D	I
Template Known Secondary structure				.		T	T		S	S				S	S	S	S	S	S						T	T	T	T	T					T	T	T	T	T	G	G	G		S	S	S			B			S								T	T						T	T		S						G	G	G	S
Template Predicted Secondary structure				.
Template SS confidence
		57	.		.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.																			.	.	.	.	.	.	220	.	.
Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	L	R	C	R	K	S	G	V	L	T	G	L	P	D	G	Y	G	R	G	R	I	I	G	D	Y	R	R	V	A	L	Y	G	I	S	Y	L	V	R	E	R	E	L	Q	F	A	D	L	Q	S	R	L	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	G	E	D	L	E	A	T	I
Query Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.
Template Sequence		M	Q	I	L	Y	T	G	S	V	F	V	.	L	T	E	I	A	G	I	S	H	V	A	V	N	Y	P	Y	L	L	R	R	G	F	R	W	F	L	E	E	S	E	R	R	I	R	A	L	E	E	S	G	V	Y	E	G	E	K	Y	S	F	Y	Q	A	A	K	I	V	S	E	A	V	I	N	Y	G	L	R	Y	S
Template Known Secondary structure							T	S	S	S			.			G	G	G														T	T																			T	T	S
Template Predicted Secondary structure													.
Template SS confidence
		136	.	.	.	140	.	.	.	.	.	.		.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
		223	.	.	.	.	.	.	230			.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure										.	.
Query SS confidence										.	.
Query Sequence		R	L	R	E	E	L	A	E	.	.	H	R	H	A	L	L	Q	I	Q	E	M	A	A	K	Y	G	F	D	I	S	R	P	A	Q	N	A	Q	E	A	V	Q	W	L	Y	F	A	Y	L	A	A	V	K	S	Q	N	G	G	A	M	S	L	G	R	T	A	S	F	L	D	I	Y	I	E	R	D	F	K	A	G	V
Query Conservation										.	.
Alig confidence										.	.
Template Conservation
Template Sequence		K	L	A	E	E	L	A	E	S	E	D	G	E	R	R	E	E	L	L	K	I	A	E	I	C	R	K	V	P	A	E	K	P	E	T	F	W	E	A	V	Q	F	V	W	L	V	Q	S	A	L	H	Q	E	N	Y	E	Q	A	I	S	M	G	R	I	D	Q	Y	L	Y	P	F	F	K	K	D	I	G	E	G	R
Template Known Secondary structure									T	T	S																		T	T	T	S				S																			S		S	S						S					S								T	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380
Predicted Secondary structure
Query SS confidence
Query Sequence		L	N	E	Q	Q	A	Q	E	L	I	D	H	F	I	M	K	I	R	M	V	R	F	L	R	T	P	E	F	D	S	L	F	S	G	D	P	I	W	A	T	E	V	I	G	G	M	G	L	D	G	R	T	L	V	T	K	N	S	F	R	Y	L	H	T	L	H	T	M	G	P	A	P	E	P	N	L	T	I	L	W
Query Conservation
Alig confidence																																																																						.
Template Conservation																																																																						.
Template Sequence		I	N	R	E	L	A	F	D	I	L	A	N	L	W	I	K	T	N	E	I	V	P	A	F	D	S	L	L	E	Q	Y	F	S	G	Q	A	T	N	Q	A	V	T	I	G	G	C	D	I	Y	G	N	D	A	T	N	E	L	T	Y	L	M	L	E	V	T	D	R	L	.	R	L	R	Q	P	N	V	H	V	R	I
Template Known Secondary structure		S																T	T	S	B												S	T	T	T											B		T	T	S		B																	.			S		S
Template Predicted Secondary structure																																																																						.
Template SS confidence
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.		.	.	.	.	.	.	.	370	.	.	.
		381	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.		.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.									.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.		.	440	.	.	.	.	.	.	.	.	.	450
Predicted Secondary structure																			.																		.	.	.	.	.	.	.	.																									.
Query SS confidence																			.																		.	.	.	.	.	.	.	.																									.
Query Sequence		S	E	E	L	P	I	A	F	K	K	Y	A	A	Q	V	S	I	.	V	T	S	S	L	Q	Y	E	N	D	D	L	M	R	T	D	F	.	.	.	.	.	.	.	.	N	S	D	D	Y	A	I	A	C	C	V	S	P	M	V	I	G	K	Q	M	Q	F	F	G	.	A	R	A	N	L	A	K	T	L	L	Y	A
Query Conservation																			.																		.	.	.	.	.	.	.	.																									.
Alig confidence																			.																		.	.	.	.	.	.	.	.																									.
Template Conservation
Template Sequence		N	K	G	S	P	E	S	F	L	K	R	L	A	E	A	I	S	S	G	C	N	N	L	A	L	F	F	D	D	A	A	V	K	A	L	K	N	A	E	V	D	D	R	D	A	L	N	Y	T	T	D	G	C	V	E	I	A	P	F	G	N	S	F	T	S	S	D	A	A	L	I	N	V	A	K	A	L	E	Y	A
Template Known Secondary structure			T	T	S														T	T																			T	T								T					T	T	T					S	S	S					T	T	S
Template Predicted Secondary structure
Template SS confidence
		374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.
		451	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.
Predicted Secondary structure																																																																										.	.	.	.	.	.	.	.
Query SS confidence																																																																										.	.	.	.	.	.	.	.
Query Sequence		I	N	G	G	V	D	E	K	L	K	I	Q	V	G	P	K	T	A	P	L	M	D	D	V	L	D	Y	D	K	V	M	D	S	L	D	H	F	M	D	W	L	A	V	Q	Y	I	S	A	L	N	I	I	H	Y	M	H	D	K	Y	S	Y	E	A	S	L	M	A	L	H	D	R	D	.	.	.	.	.	.	.	.
Query Conservation																																																																										.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.																																																		.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.
Template Sequence		L	N	E	G	V	D	L	Q	F	G	Y	E	F	G	A	K	T	E	K	.	.	.	.	P	K	F	L	E	D	L	L	E	K	L	R	E	Q	V	S	H	I	V	K	L	V	V	R	G	S	N	V	L	S	Y	A	N	A	E	V	K	P	T	P	L	L	S	L	C	V	E	D	C	F	E	K	G	V	D	V	S
Template Known Secondary structure			T	T	T	B		T	T	T			B		S						.	.	.	.			S																																										T	S	T	T					T			T	T
Template Predicted Secondary structure																					.	.	.	.
Template SS confidence
		454	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.					.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.
						523	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.					.	.	.	.	.	.	.	560	.	.	.	.	.	.								.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.																															.	.	.	.															.	.	.	.	.	.	.
Query SS confidence		.	.	.	.																															.	.	.	.															.	.	.	.	.	.	.
Query Sequence		.	.	.	.	V	Y	R	T	M	A	C	G	I	A	G	L	S	V	A	T	D	S	L	S	A	I	K	Y	A	R	V	K	P	I	.	.	.	.	R	D	E	N	G	L	A	V	D	F	E	I	D	G	.	.	.	.	.	.	.	E	Y	P	Q	Y	G	N	N	D	E	R	V	D	S	I	A	C	D	L	V	E
Query Conservation		.	.	.	.																															.	.	.	.															.	.	.	.	.	.	.
Alig confidence		.	.	.	.																											.				.	.	.	.															.	.	.	.	.	.	.
Template Conservation																																.
Template Sequence		R	G	G	A	R	Y	N	F	T	G	I	Q	A	V	G	I	A	D	V	G	D	S	L	V	A	I	E	G	A	L	.	N	A	G	Y	S	M	D	D	I	V	E	A	C	R	K	N	F	V	G	Y	E	K	L	H	K	L	L	L	Q	S	P	K	Y	G	N	D	D	D	A	A	D	K	Y	T	K	M	V	L	E
Template Known Secondary structure		T	T		S	S																										.		T	T												T	T	T	S	S											S			T	T	S	S
Template Predicted Secondary structure																																.
Template SS confidence
		530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.		560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.
		588	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	F	M	K	K	I	K	A	L	P	T	Y	R	N	A	V	P	T	Q	S	I	L	T	I	T	S	N	V	V	Y	G	Q	K	T	G	N	T	P	D	G	R	R	A	G	T	P	F	A	P	G	A	N	P	M	H	G	R	D	R	K	G	A	V	A	S	L	T	S	V	A	K	L	P	F	T	Y	A	K	D	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		W	Y	C	E	E	V	N	R	H	R	N	F	R	G	G	K	F	A	A	G	C	Y	P	M	T	T	N	V	G	F	G	F	F	T	S	A	L	P	S	G	R	K	S	G	E	P	L	N	P	G	V	S	P	S	T	G	M	D	R	E	G	V	T	A	V	I	N	S	A	S	K	L	S	Y	E	N	L	P	N	G
Template Known Secondary structure									T		B		T	T	S	S									T	T													T	T	S			T	T						T	T	S			T	T				S		S								T	T	S		G	G	G		T	T
Template Predicted Secondary structure
Template SS confidence
		609	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.
		668	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	S	Y	T	F	S	I	V	P	A	A	L	G	K	E	D	P	V	R	K	T	N	L	V	G	L	L	D	G	Y	F	H	H	E	A	D	V	E	G	G	Q	H	L	N	V	N	V	M	N	R	E	M	L	L	D	A	I	E	H	P	E	K	Y	P	N	L	T	I	R	V	S	G	Y	A	V	R	F	N	A	L
Query Conservation
Alig confidence														.	.	.																		.	.	.	.	.
Template Conservation														.	.	.																		.	.	.	.	.
Template Sequence		A	S	L	T	I	N	L	S	S	D	V	L	.	.	.	G	E	K	G	D	A	V	I	E	A	L	I	K	S	S	M	E	.	.	.	.	.	L	G	V	M	H	V	Q	F	N	I	L	K	E	D	L	L	R	K	A	Q	Q	E	P	E	K	Y	R	W	L	L	V	R	V	A	G	W	S	A	Y	F	V	E	L
Template Known Secondary structure														.	.	.		S																.	.	.	.	.	T	T		S																T	T		G	G	G	G	T	T						S	S	S				G	G	G	S
Template Predicted Secondary structure														.	.	.																		.	.	.	.	.
Template SS confidence
		689	690	.	.	.	.	.	.	.	.	.	700				.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.						.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760
		748	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	R	E	Q	Q	Q	D	V	I	S	R	T	F	T	Q	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	R	P	V	Q	E	E	V	I	R	R	I	S	C	R	I
Template Known Secondary structure											T	T		B
Template Predicted Secondary structure
Template SS confidence
		761	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.