Job Description P31473 Confidence 100.00% Date Thu Jan 5 11:48:01 GMT 2012 Rank 4 Aligned Residues 387 % Identity 13% Template c3qmzA_ PDB info PDB header:motor protein Chain: A: PDB Molecule:cytoplasmic dynein heavy chain; PDBTitle: crystal structure of the cytoplasmic dynein heavy chain motor domain Resolution 6.00 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	E	R	S	H	A	I	R	L	C	L	L	A	A	L	S	G	E	S	V	F	L	L	G	P	P	G	I	A	K	S	L	I	A	R	R	L	K	F	A	F	Q	N	A	R	A	F	E	Y	L	M	T	R	F	S	T	P	E	E	V	F	G	P	L	S	I	Q	A	L	K	D	E	G	R	Y	E	R	L	T	S
Query Conservation
Alig confidence																																																																				.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																				.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	D	T	I	K	H	E	K	I	F	Y	D	L	L	N	S	K	R	G	I	I	L	C	G	P	P	G	S	G	K	T	M	I	M	N	N	A	L	R	N	S	S	L	Y	D	V	V	G	I	N	F	S	K	D	T	T	T	E	H	I	L	S	A	L	H	R	.	.	.	.	.	.	.	.	.	.	.	.	H	T
Template Known Secondary structure		S	T										T			S								S	S	S	S											T	T		S	S									S	S														T	T	.	.	.	.	.	.	.	.	.	.	.	.	T	T
Template Predicted Secondary structure																																																																				.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2395	.	.	.	.	2400	.	.	.	.	.	.	.	.	.	2410	.	.	.	.	.	.	.	.	.	2420	.	.	.	.	.	.	.	.	.	2430	.	.	.	.	.	.	.	.	.	2440	.	.	.	.	.	.	.	.	.	2450	.	.	.	.	.	.	.	.	.	2460													.	.
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Y	L	P	E	A	E	I	V	F	L	D	E	I	W	K	A	G	P	A	I	L	N	T	L	L	T	A	I	N	E	R	Q	F	R	N	G	A	H	V	E	K	I	P	M	R	L	L	V	A	A	S	N	E	L	P	E	A	D	S	S	L	E	A	L	Y	D	R	M	L	I	R	L	W	L	D	K	V	Q	D
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.	.																																																							.
Template Conservation														.	.	.	.	.	.	.	.	.																																																							.
Template Sequence		N	Y	V	I	K	N	L	V	L	F	C	V	.	.	.	.	.	.	.	.	.	V	L	F	L	R	Q	L	M	E	K	Q	G	F	W	K	T	P	E	N	K	W	V	T	I	E	R	I	H	I	V	G	A	C	N	P	P	T	D	P	G	R	I	P	M	S	E	R	F	T	R	H	A	A	I	.	Y	P	S	G
Template Known Secondary structure		T	T											.	.	.	.	.	.	.	.	.								S						S	S																S	S	S	S	S	T	T	T	T	S			S							T	S				.
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.																																																							.
Template SS confidence
		2463	.	.	.	.	.	.	2470	.	.	.	.										.	.	.	.	.	2480	.	.	.	.	.	.	.	.	.	2490	.	.	.	.	.	.	.	.	.	2500	.	.	.	.	.	.	.	.	.	2510	.	.	.	.	.	.	.	.	.	2520	.	.	.	.	.	.	.	.		.	2530	.	.
		183	.	.	.	.	.	.			190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.					.	250	.	.	.	.	.	.
Predicted Secondary structure									.	.																																																												.	.	.	.
Query SS confidence									.	.																																																												.	.	.	.
Query Sequence		K	A	N	F	R	S	M	.	.	L	T	S	Q	Q	D	E	N	D	N	P	V	P	D	A	L	Q	V	T	D	E	E	Y	E	R	W	Q	K	E	I	G	E	I	T	L	P	D	H	V	F	E	L	I	F	M	L	R	Q	Q	L	D	K	L	P	D	A	P	Y	V	.	.	.	.	S	D	R	R	W	K	K	A
Query Conservation									.	.																																																												.	.	.	.
Alig confidence									.	.																																																												.	.	.	.
Template Conservation
Template Sequence		K	S	L	S	Q	I	Y	E	I	Y	Y	K	A	I	F	K	L	V	P	E	F	R	S	Y	T	E	P	F	A	R	A	S	V	H	L	Y	N	E	C	K	A	R	Y	S	T	G	L	Q	S	H	Y	L	F	S	P	R	E	L	T	R	L	V	R	G	V	Y	T	A	I	N	T	G	P	R	Q	T	L	R	S	L
Template Known Secondary structure											S	S	S			S	S																											T	S		T					T	T	S																S	S		S		S		S	S	S
Template Predicted Secondary structure
Template SS confidence
		2565	.	.	.	.	2570	.	.	.	.	.	.	.	.	.	2580	.	.	.	.	.	.	.	.	.	2590	.	.	.	.	.	.	.	.	.	2600	.	.	.	.	.	.	.	.	.	2610	.	.	.	.	.	.	.	.	.	2620	.	.	.	.	.	.	.	.	.	2630	.	.	.	.	.	.	.	.	.	2640	.	.	.	.
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	R	L	L	Q	A	S	A	F	F	S	G	R	S	A	V	A	P	V	D	L	I	L	L	K	D	C	L	W	Y	D	A	Q	S	L	N	L	I	Q	Q	Q	I	D	V	L	M	T	G	H	A	W	Q	Q	Q	G	M	L	T	R	L	G	A	I	V	Q	R	H	L	Q	L	Q	Q	Q	Q	S	D	K	T	A	L
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	R	L	W	A	Y	E	A	W	R	I	F	A	V	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	K	N	S	F	E	Q	L	L	Y	E	T	V	D	K	Y	L	P	N	Q	D	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	N	I	S	S
Template Known Secondary structure												S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														S	S	S						S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2645	.	.	.	.	2650	.	.	.	.	.	.	.	.	.																			2660	.	.	.	.	.	.	.	.	.	2670	.	.	.	.	.	.	.	.	.	2680	.																					.	.	.	.	.
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
Predicted Secondary structure																																																																							.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																							.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	V	I	R	L	G	G	I	F	S	R	R	Q	Q	Y	Q	L	P	V	N	V	T	A	S	T	L	T	L	L	L	Q	K	P	L	K	L	H	D	M	E	V	V	H	I	S	F	E	R	S	A	L	E	Q	W	L	S	K	G	G	E	I	R	G	K	L	N	G	I	G	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																							.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.																																												.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.
Template Sequence		T	N	K	T	D	L	V	N	F	I	E	E	R	F	K	T	F	C	D	E	E	.	.	.	.	.	P	M	V	I	H	E	S	M	V	D	H	I	L	R	I	D	R	A	L	K	Q	V	Q	G	H	M	M	L	I	G	A	S	R	T	G	K	T	I	L	T	R	F	V	A	W	L	N	G	L	K	I	V	Q	P
Template Known Secondary structure																		T	T	T	T		.	.	.	.	.																		T	S	S	S	S						S	S	T	T													S		S	S							T
Template Predicted Secondary structure																							.	.	.	.	.
Template SS confidence
		2692	.	.	.	.	.	.	.	2700	.	.	.	.	.	.	.	.	.	2710	.	.						.	.	.	.	.	.	.	2720	.	.	.	.	.	.	.	.	.	2730	.	.	.	.	.	.	.	.	.	2740	.	.	.	.	.	.	.	.	.	2750	.	.	.	.	.	.	.	.	.	2760	.	.	.	.	.	.
				406	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	F	A	Q	K	L	N	L	E	V	D	S	A	Q	H	L	V	V	R	D	V	S	L	Q	G	S	T	L	A	L	P	G	S	S	A	E	G	L	P	G	E	I	K	Q	Q	L	E	E	L	E	S	D	W	R	K	Q	H	A	L	F	S	E	Q	Q	K	C	L	F	I	P	G	D	W	L	G	R	I	E	A
Query Conservation		.	.
Alig confidence		.	.																																																			.	.	.	.	.	.	.	.	.			.	.	.	.
Template Conservation																																																						.	.	.	.	.	.	.	.	.			.	.	.	.
Template Sequence		K	I	H	R	H	S	N	L	S	D	F	D	M	I	L	K	K	A	I	S	D	C	S	L	K	E	S	R	T	C	L	I	I	D	E	S	N	I	L	E	T	A	F	L	E	R	M	N	T	L	L	A	.	.	.	.	.	.	.	.	.	N	D	.	.	.	.	L	F	Q	G	E	E	Y	D	K	L	L	N	N
Template Known Secondary structure		T	T	S		T	T															T	T	S	S	S		S							S	G	G	G	S														T	.	.	.	.	.	.	.	.	.			.	.	.	.				T	T	T	S
Template Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.			.	.	.	.
Template SS confidence
		2785	.	.	.	.	2790	.	.	.	.	.	.	.	.	.	2800	.	.	.	.	.	.	.	.	.	2810	.	.	.	.	.	.	.	.	.	2820	.	.	.	.	.	.	.	.	.	2830	.	.	.	.	.	.										.	.					.	2840	.	.	.	.	.	.	.	.	.	2850	.
		484	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	Q	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	R	N	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		2856	.	.	.