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Job DescriptionP31473
Confidence99.94%DateThu Jan 5 11:48:01 GMT 2012
Rank8Aligned Residues252
% Identity19%Templatec3k1jA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:atp-dependent protease lon; PDBTitle: crystal structure of lon protease from thermococcus onnurineus na1
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   18.20.........30.........40.........50.........60....
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Query Sequence  LEKGLYERSHAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAFQ. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  LIDQVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQGRRIV
Template Known Secondary structure 

S
TT



TTSSTS

SS


TT
TTS
TT
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   3940.........50.........60.........70.........80.........90.........100.........110........
 
   65....70.........80.........90.........100......... 110.........
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . NARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYERLTSGYLPEAE. . IVFLDEIWKA
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Template Sequence  EKYREKAKSQESVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFLGTPAHERVEPGMIHRAHKGVLFIDEIATL
Template Known Secondary structure  T






TT
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GGGG

TTTSTTGGGS
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   119120.........130.........140.........150.........160.........170.........180.........190........
 
   120.........130.........140.... .....150.........160.........170.........180.........
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Query Sequence  GPAILNTLLTAINERQFRNGAHVEK. . . . . . . . . . IPMRLLVAASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSM
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Template Sequence  SLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVDKMHPALRSRIRGYGYEVYMR. . . . . . . .
Template Known Secondary structure 
S

B
S
TTSGGGG
B
S




S
S

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   251........260.........270.........280.........290.........300.........310.........320..
 
   190.........200.........210.........220.........230.........240.........250.........260.........
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Query Sequence  LTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGR
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Template Sequence  . . . . . TTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGK
Template Known Secondary structure  .....S


SS

BBTT
STT

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   323......330.........340.........350.........360.........370.........380.........390.......
 
   270.........280..
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Query Sequence  SAVAPVDLILLKD
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Template Sequence  KYVEREDVIEAVK
Template Known Secondary structure  SSB
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   398.400.........410
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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