Job Description P31473 Confidence 96.39% Date Thu Jan 5 11:48:01 GMT 2012 Rank 371 Aligned Residues 75 % Identity 13% Template c3dm5A_ PDB info PDB header:rna binding protein, transport protein Chain: A: PDB Molecule:signal recognition 54 kda protein; PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus. Resolution 2.51 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.									.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.												.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	P	H	L	L	A	E	R	I	S	R	L	S	S	S	L	E	K	G	L	Y	E	R	.	.	.	.	.	.	.	.	S	H	A	I	R	L	C	L	L	A	A	L	S	G	E	S	.	.	.	.	.	.	.	.	.	.	.	V	F	L	L	G	P	P	G	I	A	K	S	L	I	A	R	R	L	K	F	A	F
Query Conservation																									.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	V	R	L	V	L	Q	L	T	R	E	I	Q	R	R	A	L	E	E	K	P	P	A	G	I	S	K	K	E	H	I	I	K	I	V	Y	E	E	L	T	K	F	L	G	T	E	A	K	P	I	E	I	K	E	K	P	T	I	L	L	M	V	G	I	Q	G	S	G	K	T	T	T	V	A	K	L	A	R	Y	F
Template Known Secondary structure																								T	T																			T	T	S	S								S	S	S									T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
		64	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	N	A	R	A	F	E	Y	L	M	T	R	F	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	K	R	G	Y	K	V	G	V	V	C	S	D	T
Template Known Secondary structure			T	T	T
Template Predicted Secondary structure
Template SS confidence
		125	.	.	.	.	130	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions