Job Description P31473 Confidence 99.61% Date Thu Jan 5 11:48:01 GMT 2012 Rank 58 Aligned Residues 200 % Identity 13% Template c3bosA_ PDB info PDB header:hydrolase regulator,dna binding protein Chain: A: PDB Molecule:putative dna replication factor; PDBTitle: crystal structure of a putative dna replication regulator hda2 (sama_1916) from shewanella amazonensis sb2b at 1.75 a resolution Resolution 1.75 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.			.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure																										.	.
Query SS confidence																										.	.
Query Sequence		L	E	K	G	L	Y	E	R	S	H	A	I	R	L	C	L	L	A	A	L	S	G	E	S	.	.	V	F	L	L	G	P	P	G	I	A	K	S	L	I	A	R	R	L	K	F	A	F	Q	N	A	R	A	F	E	Y	L	M	T	R	F	S	T	P	E	E	V	F	G	P	L	S	I	Q	A	L	K	D	E	G
Query Conservation																										.	.
Alig confidence																										.	.																							.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																		.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	T	S	Y	Y	P	G	N	D	E	L	I	G	A	L	K	S	A	A	S	G	D	G	V	Q	A	I	Y	L	W	G	P	V	K	S	G	R	T	H	L	I	H	A	A	C	A	R	A	.	N	E	L	E	R	R	S	F	Y	I	P	L	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	H	A
Template Known Secondary structure		T	T	T	S																	T		S		S							S	T	T	S	S													.			T	T								G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	G
Template Predicted Secondary structure																																																		.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.		.	.	.	.	.	.	80	.	.	.	.	.	.																.	.	.
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120							.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.
Query Sequence		R	Y	E	R	L	T	S	G	Y	L	P	E	A	E	I	V	F	L	D	E	I	W	K	A	G	.	.	.	.	.	.	P	A	I	L	N	T	L	L	T	A	I	N	E	R	Q	F	R	N	G	A	H	V	E	K	I	P	M	R	L	L	V	A	A	S	N	E	L	P	E	A	D	S	S	L	E	A	L	Y	D
Query Conservation																											.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	I	S	T	A	L	L	E	G	L	E	Q	F	D	L	I	C	I	D	D	V	D	A	V	A	G	H	P	L	W	E	E	A	I	F	D	L	Y	N	R	V	A	E	Q	.	.	.	.	.	.	.	.	.	.	.	.	K	R	G	S	L	I	V	S	A	S	A	S	P	X	E	A	G	F	V	L	P	D	L	V
Template Known Secondary structure		G	S		G	G	G	G	T	T	G	G	G	S	S						T	G	G	G	G	T	T																			.	.	.	.	.	.	.	.	.	.	.	.		S								S	S		T	T	T	T	T
Template Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.													.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
					170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	R	M	L	I	R	L	W	L	D	K	V	Q	D	K	A	N	F	R	S	M	L	T	S	Q	Q	D	E	N	D	N	P	V	P	D	A	L	Q	V	T	D	E	E	Y	E	R	W	Q	K	E	I	G	E	I	T	L	P	D	H	V	F	E	L	I	F	M	L	R	Q	Q	L	D	K	L	P	D	A	P
Query Conservation		.	.	.
Alig confidence		.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.
Template Sequence		S	R	X	H	W	G	L	T	Y	Q	L	Q	P	X	X	D	D	E	K	L	A	A	L	Q	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	A	A	X	R	G	L	Q	L	P	E	D	V	G	R	F	L	L	N	R	.	.	.	.	.	.	.	.	.	.	X
Template Known Secondary structure							S										G	G	G								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T	T															.	.	.	.	.	.	.	.	.	.	T
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.																									.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.											.
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	V	S	D	R	R	W	K	K	A	I	R	L	L	Q	A	S	A	F	F	S	G	R	S	A	V	A	P	V	D	L	I	L	L
Query Conservation
Alig confidence																									.
Template Conservation																									.
Template Sequence		A	R	D	L	R	T	L	F	D	V	L	D	R	L	D	K	A	S	X	V	H	Q	R	.	K	L	T	I	P	F	V	K	E	X
Template Known Secondary structure		T	T																				T		.
Template Predicted Secondary structure																									.
Template SS confidence
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.		.	230	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions