Job Description P31473 Confidence 99.97% Date Thu Jan 5 11:48:01 GMT 2012 Rank 7 Aligned Residues 399 % Identity 17% Template c2dhrC_ PDB info PDB header:hydrolase Chain: C: PDB Molecule:ftsh; PDBTitle: whole cytosolic region of atp-dependent metalloprotease2 ftsh (g399l) Resolution 3.90 Å

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		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.															.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	G	L	Y	E	R	S	H	A	I	R	L	C	L	L	A	A	L	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	E	S	V	F	L	L	G	P	P	G	I	A	K	S	L	I	A	R	R	L	K	F	A	F	Q	N	A	R	A	F	E	Y	L	M	T	R	F	S	T	P	E	E	V	F	G	P
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.														.	.	.	.	.
Template Conservation																																																												.														.	.	.	.	.
Template Sequence		K	D	V	A	G	A	E	E	A	K	E	E	L	K	E	I	V	E	F	L	K	N	P	S	R	F	H	E	M	G	A	R	I	P	K	G	V	L	L	V	G	P	P	G	V	G	K	T	H	L	A	R	A	V	A	G	E	A	.	R	V	P	F	I	T	A	S	G	S	D	F	V	.	.	.	.	.	E	M	F
Template Known Secondary structure		T	S	S		S																		G	G	G	T	T	T	T	S					S							S	T	T	S	S												T	.	T								G	G	G	G	T	.	.	.	.	.	S	S
Template Predicted Secondary structure																																																												.														.	.	.	.	.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.		.	.	.	.	.	.	220	.	.	.	.	.	.						.	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120															.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	S	I	Q	A	L	K	D	E	G	R	Y	E	R	L	T	S	G	Y	L	P	E	A	E	I	V	F	L	D	E	I	W	K	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	A	I	L	N	T	L	L	T	A	I	N	E	R	Q	F	R	N	G	A	H	V	E	K	I	P	M	R	L	L	V
Query Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.
Template Conservation																				.	.	.																																											.	.	.	.	.	.	.	.	.
Template Sequence		V	G	V	G	A	A	R	V	R	D	L	F	E	T	A	K	R	H	.	.	.	A	P	C	I	V	F	I	D	E	I	D	A	V	G	R	K	R	G	S	G	V	G	G	G	N	D	E	R	E	Q	T	L	N	Q	L	L	V	E	M	D	G	F	.	.	.	.	.	.	.	.	.	E	K	D	T	A	I	V	V
Template Known Secondary structure		T	T											T	T	S	T	T	S	.	.	.	S	S								G	G	G	T				S	S	S	S	T	T	T	S	S														G	G	G		.	.	.	.	.	.	.	.	.		S	S
Template Predicted Secondary structure																				.	.	.																																											.	.	.	.	.	.	.	.	.
Template SS confidence
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.				.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.										290	.	.	.	.	.	.	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	S	N	E	L	P	E	A	D	S	S	L	E	A	L	Y	D	R	M	L	I	R	L	W	L	D	K	V	Q	D	K	A	N	F	R	S	M	L	T	S	Q	Q	D	E	N	D	N	P	V	P	D	A	L	Q	V	T	D	E	E	Y	E	R	W	Q	K	E	I	G	E	I	T	L	P	D	H	V	F	E	L
Query Conservation
Alig confidence																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	A	A	T	N	R	P	D	I	L	D	P	A	L	L	R	P	G	R	F	D	R	Q	I	A	I	D	A	P	D	V	K	G	R	E	Q	I	L	R	I	H	A	R	G	K	P	L	A	E	D	V	D	L	A	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure						S		G	G	G	S		T	T	T	S	S	T	T	S	S																					T	T	S	S	S					S	S	T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.		.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure																																																							.
Query SS confidence																																																							.
Query Sequence		I	F	M	L	R	Q	Q	L	D	K	L	P	D	A	P	Y	V	S	D	R	R	W	K	K	A	I	R	L	L	Q	A	S	A	F	F	S	G	R	S	A	V	A	P	V	D	L	I	L	L	K	D	C	L	.	W	Y	D	A	Q	S	L	N	L	I	Q	Q	Q	I	D	V	L	M	T	G	H	A	W	Q	Q	Q
Query Conservation																																																							.
Alig confidence		.	.	.	.	.	.	.	.	.	.																																												.
Template Conservation		.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	A	K	R	T	P	G	F	V	G	A	D	L	E	N	L	L	N	E	A	A	L	L	A	A	R	E	G	R	R	K	I	T	M	K	D	L	E	E	A	A	D	R	V	M	M	L	P	A	K	K	S	L	V	L	S	P	R	D	R	R	I	T	A	Y	H	E	A	G	H	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.		T	T	S		S																							S	S			S											T	T		S	S	S	S						T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.
Template SS confidence
												354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
		311	.	.	.	.	.	.									.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.
Query Sequence		G	M	L	T	R	L	G	.	.	.	.	.	.	.	.	A	I	V	Q	R	H	L	Q	L	Q	Q	Q	Q	S	D	K	T	A	L	T	V	I	R	L	G	G	I	F	S	R	R	Q	Q	Y	Q	L	P	V	N	V	T	A	S	T	L	T	L	L	L	Q	K	P	L	K	L	H	D	M	E	V	V	H	I	S	F
Query Conservation									.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.															.																													.	.	.
Template Conservation																															.																													.	.	.
Template Sequence		L	A	A	H	F	L	E	H	A	D	G	V	H	K	V	T	I	V	P	R	G	R	A	L	G	F	M	M	P	.	R	R	E	D	M	L	H	W	S	R	K	R	L	L	D	Q	I	A	V	A	L	A	G	R	A	A	E	E	.	.	.	I	V	F	D	D	V	T	T	G	A	E	N	D	F	R	Q	A	T	E
Template Known Secondary structure							S	S	S									S			S	S	S	T	T		S	S			.			T	T																									.	.	.			S		S
Template Predicted Secondary structure																															.																													.	.	.
Template SS confidence
		424	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.		.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480				.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.
		383	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.			400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460
Predicted Secondary structure																			.	.
Query SS confidence																			.	.
Query Sequence		E	R	S	A	L	E	Q	W	L	S	K	G	G	E	I	R	G	.	.	K	L	N	G	I	G	F	A	Q	K	L	N	L	E	V	D	S	A	Q	H	L	V	V	R	D	V	S	L	Q	G	S	T	L	A	L	P	G	S	S	A	E	G	L	P	G	E	I	K	Q	Q	L	E	E	L	E	S	D	W	R	K	Q
Query Conservation																			.	.
Alig confidence																			.	.
Template Conservation
Template Sequence		L	A	R	R	M	I	T	E	W	G	M	H	P	E	F	G	P	V	A	Y	A	V	R	E	D	T	Y	L	G	G	Y	D	V	R	Q	Y	S	E	E	T	A	K	R	I	D	E	A	V	R	R	L	I	E	E	Q	Y	Q	R	V	K	A	L	L	L	E	K	R	E	V	L	E	R	V	A	E	T	L	L	E	R
Template Known Secondary structure									T	S				S	S	S		S										S	S																																						T
Template Predicted Secondary structure
Template SS confidence
		500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.
		461	.	.	.	.	.	.	.	.	470	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	A	L	F	S	E	Q	Q	K	C	L	F	I	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	T	L	T	A	E	E	F	Q	R	V	V	E	G
Template Known Secondary structure		S												T	T
Template Predicted Secondary structure
Template SS confidence
		580	.	.	.	.	.	.	.	.	.	590	.	.	.