Job Description P31473 Confidence 99.75% Date Thu Jan 5 11:48:01 GMT 2012 Rank 42 Aligned Residues 222 % Identity 17% Template c2c99A_ PDB info PDB header:transcription regulation Chain: A: PDB Molecule:psp operon transcriptional activator; PDBTitle: structural basis of the nucleotide driven conformational2 changes in the aaa domain of transcription activator pspf Resolution 1.9 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		22	.	.	.					.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.			.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure						.	.	.	.																																										.	.
Query SS confidence						.	.	.	.																																										.	.
Query Sequence		L	Y	E	R	.	.	.	.	S	H	A	I	R	L	C	L	L	A	A	L	S	G	E	S	V	F	L	L	G	P	P	G	I	A	K	S	L	I	A	R	R	L	K	F	A	F	Q	N	A	.	.	R	A	F	E	Y	L	M	T	R	F	S	T	P	E	E	V	F	G	P	L	S	I	Q	A	L	K	D	E	G
Query Conservation						.	.	.	.																																										.	.
Alig confidence						.	.	.	.																																										.	.
Template Conservation
Template Sequence		L	L	G	E	A	N	S	F	L	E	V	L	E	Q	V	S	H	L	A	P	L	D	K	P	V	L	I	I	G	E	R	G	T	G	K	E	L	I	A	S	R	L	H	Y	L	S	S	R	W	Q	G	P	F	I	S	L	N	C	A	A	L	N	E	N	L	L	D	S	E	L	F	G	H	E	A	K	R	H	P	G
Template Known Secondary structure																				T	T	S		S								T	T	S	S											T	S	T	T	T	T	S							G	G	G	S												B					B
Template Predicted Secondary structure
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.						.	.	.	.	.	170
Predicted Secondary structure																																																																							.	.	.	.	.
Query SS confidence																																																																							.	.	.	.	.
Query Sequence		R	Y	E	R	L	T	S	G	Y	L	P	E	A	E	I	V	F	L	D	E	I	W	K	A	G	P	A	I	L	N	T	L	L	T	A	I	N	E	R	Q	F	R	N	G	A	H	V	E	K	I	P	M	R	L	L	V	A	A	S	N	E	L	P	E	A	D	S	S	L	.	.	.	.	.	E	A	L	Y	D	R
Query Conservation																																																																							.	.	.	.	.
Alig confidence										.	.	.	.	.	.																																																								.	.	.	.	.
Template Conservation										.	.	.	.	.	.
Template Sequence		R	F	E	R	A	D	G	G	.	.	.	.	.	.	T	L	F	L	D	E	L	A	T	A	P	M	M	V	Q	E	K	L	L	R	V	I	E	Y	G	E	L	E	R	V	G	G	S	Q	P	L	Q	V	N	V	R	L	V	C	A	T	N	A	D	L	P	A	M	V	N	E	G	T	F	R	A	D	L	L	D	R
Template Known Secondary structure						T	T	T	S	.	.	.	.	.	.						S	G	G	G	S															S						S	S	S														S	S									T	S	S
Template Predicted Secondary structure										.	.	.	.	.	.
Template SS confidence
		95	.	.	.	.	100	.	.							.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.				.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure																																																						.	.	.
Query SS confidence																																																						.	.	.
Query Sequence		M	L	I	R	L	W	L	D	K	V	Q	D	K	A	N	F	R	S	M	L	T	S	Q	Q	D	E	N	D	N	P	V	P	D	A	L	Q	V	T	D	E	E	Y	E	R	W	Q	K	E	I	G	E	I	.	.	.	T	L	P	D	H	V	F	E	L	I	F	M	L	R	Q	Q	L	D	K	L	P	D	A	P	Y
Query Conservation																																																						.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.													.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	A	F	D	V	V	Q	L	P	P	L	R	E	R	E	S	D	I	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	M	A	E	Y	F	A	I	Q	M	C	R	E	I	K	L	P	L	F	P	G	F	T	E	R	A	R	E	T	L	L	N	.	.	.	.	.	.	.	.	.	.	.	.	Y
Template Known Secondary structure				S								G	G	G	S						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														T	T		S	S				B											.	.	.	.	.	.	.	.	.	.	.	.	S
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.																	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.													220
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	S	D	R	R	W	K	K	A	I	R	L	L	Q	A	S	A	F	F	S	G	R	S	A	V	A	P	V	D	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	W	P	G	N	I	R	E	L	K	N	V	V	E	R	S	V	Y	R	H	G	T	S	D	Y	P	L	D	D	I
Template Known Secondary structure				T	T																			S	S	S		B
Template Predicted Secondary structure
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions