Job Description P31473 Confidence 99.58% Date Thu Jan 5 11:48:01 GMT 2012 Rank 63 Aligned Residues 146 % Identity 16% Template c1xxhB_ PDB info PDB header:transferase Chain: B: PDB Molecule:dna polymerase iii subunit gamma; PDBTitle: atpgs bound e. coli clamp loader complex Resolution 3.45 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40			.		.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.																								.	.	.	.	70	.	.	.
Predicted Secondary structure																							.	.		.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.		.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	G	L	Y	E	R	S	H	A	I	R	L	C	L	L	A	A	L	S	G	E	.	.	S	.	V	F	L	L	G	P	P	G	I	A	K	S	L	I	A	R	R	L	K	F	A	F	Q	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	R	A	F	E	Y	L	M
Query Conservation																							.	.		.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.		.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	D	V	V	G	Q	E	H	V	L	T	A	L	A	N	G	L	S	L	G	R	I	H	H	A	Y	L	F	S	G	T	R	G	V	G	K	T	S	I	A	R	L	L	A	K	G	L	N	C	E	T	G	I	T	A	T	P	C	G	V	C	D	N	C	R	E	I	E	Q	G	R	F	V	D	L	I	E	I	D	A
Template Known Secondary structure		G	G			S														T	T				S							S	T	T	S	S													S		T	T		S		S	S			S		S									T			T	T						S
Template Predicted Secondary structure
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	R	F	S	T	P	E	E	V	F	G	P	L	S	I	Q	A	L	K	D	E	G	R	Y	E	R	L	T	S	G	Y	L	P	E	A	E	I	V	F	L	D	E	I	W	K	A	G	P	A	I	L	N	T	L	L	T	A	I	N	E	R	Q	F	R	N	G	A	H	V	E	K	I	P	M	R	L	L	V	A	A
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.
Template Sequence		A	S	R	T	K	V	E	D	T	R	.	.	.	.	.	.	.	.	.	.	D	L	L	D	N	V	Q	Y	A	P	A	R	G	R	F	K	V	Y	L	I	D	E	V	H	M	L	S	R	H	S	F	N	A	L	L	K	T	L	E	E	.	.	.	.	.	.	.	.	.	.	P	P	E	H	V	K	F	L	L	A
Template Known Secondary structure		S		S	T	T	T	T				.	.	.	.	.	.	.	.	.	.					T				S		S	S	S	S								T	G	G	G															S	.	.	.	.	.	.	.	.	.	.			T	T
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.
Template SS confidence
		96	.	.	.	100	.	.	.	.	.											.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.											.	.	.	.	150	.	.	.	.	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	N	E	L	P	E	A	D	S	S	L	E	A	L	Y	D	R	M	L	I	R	L	W	L	D	K	V	Q	D	K	A	N	F	R	S	M
Query Conservation
Alig confidence								.	.	.												.
Template Conservation								.	.	.												.
Template Sequence		T	T	D	P	Q	K	.	.	.	L	P	V	T	I	L	S	R	C	L	Q	.	F	H	L	K	A	L	D	V	E	Q	I	R	H	Q	L
Template Known Secondary structure			S		T	T	S	.	.	.	S							T	S			.
Template Predicted Secondary structure								.	.	.												.
Template SS confidence
		156	.	.	.	160	.				.	.	.	.	.	.	.	.	170	.	.		.	.	.	.	.	.	.	180	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions