Job Description P31473 Confidence 99.68% Date Thu Jan 5 11:48:01 GMT 2012 Rank 50 Aligned Residues 202 % Identity 14% Template c1nsfA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:n-ethylmaleimide sensitive factor; PDBTitle: d2 hexamerization domain of n-ethylmaleimide sensitive factor (nsf) Resolution 1.90 Å

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.													.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	E	K	G	L	Y	E	R	S	H	A	I	R	L	C	L	L	A	A	L	.	.	.	.	.	.	.	.	.	.	.	.	S	G	E	S	V	F	L	L	G	P	P	G	I	A	K	S	L	I	A	R	R	L	K	F	A	F	Q	N	A	R	A	F	E	Y	L	M	T	R	F	S	T	P	E	E	V	F	G	P
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.																											.														.	.	.	.	.
Template Conservation																																																												.														.	.	.	.	.
Template Sequence		I	M	N	G	I	I	K	W	G	D	P	V	T	R	V	L	D	D	G	E	L	L	V	Q	Q	T	K	N	S	D	R	T	P	L	V	S	V	L	L	E	G	P	P	H	S	G	K	T	A	L	A	A	K	I	A	E	E	S	.	N	F	P	F	I	K	I	C	S	P	D	K	M	.	.	.	.	.	I	G	F
Template Known Secondary structure			T	T						S																					S	S		S									S	T	T	S	S													.			S							G	G	G	S	.	.	.	.	.	T	T
Template Predicted Secondary structure																																																												.														.	.	.	.	.
Template SS confidence
		503	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560		.	.	.	.	.	.	.	.	.	570	.	.	.						.	.	.
		86		.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.											.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure			.																																.	.	.	.	.	.	.	.	.	.
Query SS confidence			.																																.	.	.	.	.	.	.	.	.	.
Query Sequence		L	.	S	I	Q	A	L	K	D	E	G	R	Y	E	R	L	T	S	G	Y	L	P	E	A	E	I	V	F	L	D	E	I	W	.	.	.	.	.	.	.	.	.	.	K	A	G	P	A	I	L	N	T	L	L	T	A	I	N	E	R	Q	F	R	N	G	A	H	V	E	K	I	P	M	R	L	L	V	A	A	S
Query Conservation			.																																.	.	.	.	.	.	.	.	.	.
Alig confidence			.																		.	.	.												.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.
Template Conservation																					.	.	.																																								.	.	.	.	.	.	.	.
Template Sequence		S	E	T	A	K	C	Q	A	M	K	K	I	F	D	D	A	Y	K	S	.	.	.	Q	L	S	C	V	V	V	D	D	I	E	R	L	L	D	Y	V	P	I	G	P	R	F	S	N	L	V	L	Q	A	L	L	V	L	L	K	K	A	P	.	.	.	.	.	.	.	.	P	Q	G	R	K	L	L	I	I	G	T
Template Known Secondary structure																			T	S	.	.	.	S													T	T		B	T	T	T	T	B													T	T				.	.	.	.	.	.	.	.	S	T	T
Template Predicted Secondary structure																					.	.	.																																								.	.	.	.	.	.	.	.
Template SS confidence
		577	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.				.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.									.	.	.	.	.	640	.	.	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.									.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure																																																						.	.	.	.	.	.	.	.
Query SS confidence																																																						.	.	.	.	.	.	.	.
Query Sequence		N	E	L	P	E	A	D	S	S	L	E	A	L	Y	D	R	M	L	I	R	L	W	L	D	K	V	Q	D	K	A	N	F	R	S	M	L	T	S	Q	Q	D	E	N	D	N	P	V	P	D	A	L	Q	.	.	.	.	.	.	.	.	V	T	D	E	E	Y	E	R	W	Q	K	E	I	G	E	I	T	L	P	D
Query Conservation																																																						.	.	.	.	.	.	.	.
Alig confidence							.																																															.	.	.	.	.	.	.	.
Template Conservation							.
Template Sequence		T	S	R	K	D	.	V	L	Q	E	M	E	M	L	N	A	F	S	T	T	I	H	V	P	N	I	A	T	G	E	Q	L	L	E	A	L	E	L	L	G	N	F	K	D	K	E	R	T	T	I	A	Q	Q	V	K	G	K	K	V	W	I	G	I	K	K	L	L	M	L	I	E	M	S	L	Q	M	D	P	E	Y
Template Known Secondary structure			S				.					T	T	G	G	G	T	S	S																						T		S													T	T	S																	T	T	S		G	G	G
Template Predicted Secondary structure							.
Template SS confidence
		646	.	.	.	650		.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.
		227	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	V	F	E	L	I	F	M	L	R	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	V	R	K	F	L	A	L	L	R	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		725	.	.	.	.	730	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions