Job Description P31473 Confidence 99.83% Date Thu Jan 5 11:48:01 GMT 2012 Rank 22 Aligned Residues 229 % Identity 18% Template c1in8A_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:holliday junction dna helicase ruvb; PDBTitle: thermotoga maritima ruvb t158v Resolution 1.90 Å

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		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.								40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.
Query Sequence		K	G	L	Y	E	R	S	H	A	I	R	L	C	L	L	A	A	L	S	G	.	.	.	.	.	.	.	E	S	V	F	L	L	G	P	P	G	I	A	K	S	L	I	A	R	R	L	K	F	A	F	Q	N	A	R	A	F	E	Y	L	M	T	R	F	S	T	P	E	E	V	F	G	P	L	S	I	Q	A	L	K
Query Conservation																						.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.																									.																								.	.	.	.	.
Template Conservation																																																					.																								.	.	.	.	.
Template Sequence		D	E	F	I	G	Q	E	N	V	K	K	K	L	S	L	A	L	E	A	A	K	M	R	G	E	V	L	D	H	V	L	L	A	G	P	P	G	L	G	K	T	T	L	A	H	I	I	A	S	E	L	.	Q	T	N	I	H	V	T	S	G	P	V	L	V	K	Q	G	D	M	A	A	I	L	T	.	.	.	.	.
Template Known Secondary structure		G	G			S																			T										S	S	T	T	S	S													.	T								T	T	T			S										.	.	.	.	.
Template Predicted Secondary structure																																																					.																								.	.	.	.	.
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.		.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	E	G	R	Y	E	R	L	T	S	G	Y	L	P	E	A	E	I	V	F	L	D	E	I	W	K	A	G	P	A	I	L	N	T	L	L	T	A	I	N	E	R	Q	F	R	N	G	A	H	V	E	K	I	P	M	R	L	L	V	A	A	S	N	E	L	P	E	A	D	S	S	L	E	A	L	Y	D	R	M	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.													.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.													.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	S	L	E	R	G	D	V	L	F	I	D	E	I	H	R	L	N	K	A	V	E	E	L	L	Y	S	A	I	E	D	F	Q	I	D	I	.	.	.	.	.	.	.	.	Q	P	F	T	L	V	G	A	T	V	R	S	.	.	G	L	L	S	S	P	L	R	S	R	F	G
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	T			T	T							T	G	G	G																S					.	.	.	.	.	.	.	.										S		G	.	.	G	G	S						T	T		S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.													.	.
Template SS confidence
													99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.									.	.	.	.	.	.	140	.	.	.	.	.			.	.	.	.	150	.	.	.	.	.	.	.
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	R	L	W	L	D	K	V	Q	D	K	A	N	F	R	S	M	L	T	S	Q	Q	D	E	N	D	N	P	V	P	D	A	L	Q	V	T	D	E	E	Y	E	R	W	Q	K	E	I	G	E	I	T	L	P	D	H	V	F	E	L	I	F	M	L	R	Q	Q	L	D	K	L	P	D	A	P	Y	V	S	D	R	R
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.
Template Sequence		I	I	L	E	L	D	F	Y	T	V	K	E	L	K	E	I	I	K	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	A	S	L	M	D	V	E	I	E	D	A	A	A	E	M	I	A	K	R	.	.	.	.	.	.	.	.	.	.	S	R	G	T	P	R	I
Template Known Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T	T			B											T	.	.	.	.	.	.	.	.	.	.	S	T	T
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.																									.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.											.	.	.	.	.	.	.
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	K	K	A	I	R	L	L	Q	A	S	A	F	F	S	G	R	S	A	V	A	P	V	D	L	I	L	L	K	D	C	L	W	Y	D	A	Q	S	L	N	L	I	Q	Q	Q	I	D	V	L	M	T	G	H	A	W	Q	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	I	R	L	T	K	R	V	R	D	M	L	T	V	V	K	A	D	R	I	N	T	D	I	V	L	K	T	M	E	V	L	N	I	D	D	E	G	L	D	E	F	D	R	K	I	L	K	T	I	I	E	I	Y	R	G	G
Template Known Secondary structure																	T		S	S	B													T			T	T																	S	T	T
Template Predicted Secondary structure
Template SS confidence
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions