 |
Job Description | P76446 | Confidence | 50.93% | Date | Thu Jan 5 12:23:01 GMT 2012 |
Rank | 264 | Aligned Residues | 79 |
% Identity | 9% | Template | c3n53B_ |
PDB info |
PDB header:transcription | Chain: B: PDB Molecule:response regulator receiver modulated diguanylate cyclase; |
PDBTitle: crystal structure of a response regulator receiver modulated2 diguanylate cyclase from pelobacter carbinolicus
|
Resolution | 2.20 Å |
|
 |
  |   |
395 | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420 | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | . | . | . | . | . | . | . | 470 | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
K | E | Q | E | A | T | Q | L | F | A | W | L | H | S | V | G | V | E | I | A | I | D | D | F | G | T | G | H | S | A | L | I | Y | L | E | R | F | T | L | D | Y | L | K | I | D | R | G | F | I | N | A | I | G | T | E | T | I | T | S | P | V | L | D | A | V | L | T | L | A | K | R | L | N | M | L | T | V | A | E | G |
Query Conservation |   |
  |   |   |   |   |   |   |   |
|   |   |
|   |   |   |
|   |   |
|   |
|
|
|
|
|   |   |   |   |   |
|   |   |
|   |   |
|   |   |
|   |
|
|
|
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |
|   |
|   |
|
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |
|   |   | . | . |
|   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |
|
|
|
|
|
|   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|   |   |   |
|   |   |
|
|   |   |   |
Template Sequence |   |
Q | Q | D | F | S | R | I | E | L | K | N | F | L | D | S | E | Y | L | V | I | E | . |
. |
S | K | N | E | K | E | A | L | E | Q | I | D | H | H | H | P | D | L | V | I | L | D | X | D | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
N | L | C | L | K | L | V | P | L | I | L | L | F |
Template Known Secondary structure |   |
S |
|  |  |  |  |  |  |  |  |  |  |  | T | T | T | S |  |  |  |  | . | . |  | S | S |  |  |  |  |  |  |  |  |  |  |  |
|
| S |  |  |  |  |  |
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|  |  |  |  |
|
|
|  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  | . | . |
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
9 | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | |
|
30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | 60 | . | . | . | . | . | . |
  |
  |   |
475 | . | . | . | . | 480 | . | . | . | . | . | . | . | . | . | 490 | . | . | . | . | . | . | . | . | . | 500 | . | . | . | . | . | . | . | . | . | 510 | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
|
|  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
V | E | T | P | E | Q | A | R | W | L | S | E | R | G | V | N | F | M | Q | G | Y | W | I | S | R | P | L | P | L | D | D | F | V | R | W | L | K | K |
Query Conservation |   |
|
|   |   |   |
|   |   |   |
|   |   |   |
|   |   |   |   |
|
|   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |   |
Alig confidence |   |
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|   |
|
|   |   |   |   |
|
|   |   |   |
|   |   |
Template Sequence |   |
S | A | D | D | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Y | L | T | K | P | F | N | R | N | D | L | L | S | R | I | E | I |
Template Known Secondary structure |   |
|
|
|  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  | S | S |
|
|  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
82 | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|