 |
Job Description | P76446 | Confidence | 86.39% | Date | Thu Jan 5 12:23:01 GMT 2012 |
Rank | 93 | Aligned Residues | 106 |
% Identity | 16% | Template | c3f6cB_ |
PDB info |
PDB header:dna binding protein | Chain: B: PDB Molecule:positive transcription regulator evga; |
PDBTitle: crystal structure of n-terminal domain of positive transcription2 regulator evga from escherichia coli
|
Resolution | 1.45 Å |
|
 |
  |   |
395 | . | . | . | . | 400 | . | . | . | . | . | |
. | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420 | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | . | . | . | . | . | . | . | 470 | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  | . |  |  |  |
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
K | E | Q | E | A | T | Q | L | F | A | W | . |
L | H | S | V | G | V | E | I | A | I | D | D | F | G | T | G | H | S | A | L | I | Y | L | E | R | F | T | L | D | Y | L | K | I | D | R | G | F | I | N | A | I | G | T | E | T | I | T | S | P | V | L | D | A | V | L | T | L | A | K | R | L | N | M | L | T | V | A | E |
Query Conservation |   |
  |   |   |   |   |   |   |   |
|   |   | . |
|   |   |   |
|   |   |
|   |
|
|
|
|
|   |   |   |   |   |
|   |   |
|   |   |
|   |   |
|   |
|
|
|
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |
|   |
|   |
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |
|   |   |
| . |
|   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |
|
|   |
| . | . | . | . | . |   |   |
|   |   |   |   |
|   |   |   |   |   |   |   |   |   | . | . |   |   |   |   |   |   |
|
|   |   |
Template Sequence |   |
D | H | P | L | A | I | A | A | I | R | N | L | L | I | K | N | D | I | E | I | . |
L | A | E | L | T | E | G | G | S | A | V | Q | R | V | E | T | L | K | P | D | I | V | I | I | D | . |
. |
. |
. |
. |
V | D | I | P | G | V | N | G | I | Q | V | L | E | T | L | R | K | . |
. |
R | Q | Y | S | G | I | I | I | I | V |
Template Known Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |  |  |  | . |  |  |  |  | S | S | S | T | T |  |  |  |  |  |  |  |  |
|
| S |  |  |  |  |  | . | . | . | . | . | T | T |
| S | S | S |
|  |  |  |  |  |  |  |  |  |  | . | . | T | T |
|
| S |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  | . |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |
|
| . | . | . | . | . |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  | . | . |
|
|
|
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
8 | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | |
. | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | |
|
|
|
|
. | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | |
|
70 | . | . | . | . | . | . | . | . | . |
  |
  |   |
474 | . | . | . | . | . | 480 | . | . | . | . | . | . | . | . | . | 490 | . | . | . | . | . | . | . | . | . | 500 | . | . | . | . | . | . | . | . | . | 510 | . | . |
Predicted Secondary structure |   |
 |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
|
|  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | V | E | T | P | E | Q | A | R | W | L | S | E | R | G | V | N | F | M | Q | G | Y | W | I | S | R | P | L | P | L | D | D | F | V | R | W | L | K | K |
Query Conservation |   |
|
|
|   |   |   |
|   |   |   |
|   |   |   |
|   |   |   |   |
|
|   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   | . | . | . | . |   |
|   |
|
|   |   |   |   |   |
|   |   |   |
|   |   |
Template Sequence |   |
S | A | K | D | H | F | Y | G | K | H | C | A | D | A | G | A | N | G | . |
. |
. |
. |
F | V | S | K | K | E | G | M | N | N | I | I | A | A | I | E | A |
Template Known Secondary structure |   |
 |
|
|
|
| S | T |  |  |  |  |  |  | T | T |
| S |  | . | . | . | . |  |  |  | G | G | G |
| T |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  | . | . | . | . |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | |
|
|
|
. | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|