 |
Job Description | P76446 | Confidence | 24.15% | Date | Thu Jan 5 12:23:01 GMT 2012 |
Rank | 413 | Aligned Residues | 87 |
% Identity | 15% | Template | c3cu2A_ |
PDB info |
PDB header:isomerase | Chain: A: PDB Molecule:ribulose-5-phosphate 3-epimerase; |
PDBTitle: crystal structure of ribulose-5-phosphate 3-epimerase (yp_718263.1)2 from haemophilus somnus 129pt at 1.91 a resolution
|
Resolution | 1.91 Å |
|
 |
  |   |
400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | |
|
. | . | . | . | 420 | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | |
|
|
. | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | . | . | . | . | . | . | . | 470 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  | . | . |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  | . | . | . |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
T | Q | L | F | A | W | L | H | S | V | G | V | E | I | A | I | . |
. |
D | D | F | G | T | G | H | S | A | L | I | Y | L | E | R | F | T | L | D | Y | L | K | I | . |
. |
. |
D | R | G | F | I | N | A | I | G | T | E | T | I | T | S | P | V | L | D | A | V | L | T | L | A | K | R | L | N | M | L | T | V | A | E | G |
Query Conservation |   |
  |   |   |
|   |   |
|   |   |   |
|   |   |
|   |
| . | . |
|
|
|
|   |   |   |   |   |
|   |   |
|   |   |
|   |   |
|   |
|
|
| . | . | . |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |
|   |
|   |
|
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |
|   |
|   |
|
|
|
|
|
|
|   |
|
|   |   |   |
|   |   |   |
|   |   |
|   |   |   |
|   |   |   |
|
|
|
|
|
|
|
|   |
|
|
|
|
|
|
|
|   |   |   |
|   |   |
|
| . | . | . | . | . | . |
|   |   |   |   |
|
|
|
|
|
|
Template Sequence |   |
L | S | L | I | Q | Q | L | K | Q | Q | K | L | S | V | G | I | L | S | A | N | W | L | Q | L | N | E | E | V | T | T | L | L | E | N | Q | I | N | V | L | H | F | D | I | A | D | G | Q | F | S | S | L | F | T | V | G | A | I | G | I | K | Y | F | P | . |
. |
. |
. |
. |
. |
T | H | C | F | K | D | V | H | L | X | V |
Template Known Secondary structure |   |
 |  |  |  |  |  |  | T | T |
|
|  |  |  |  | G | G | G | S |
| G | G | G |  |  |  |  |  |  |  |  |  |  | T | T |
|
|  |  |  |  |  |  |  | B | S | S | S | S | S |
| B |
| B |
| T |  |  |  |  | T | S |
| . | . | . | . | . | . | T | T | S |  |  |  |  |  |  |  |
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
| . | . | . | . | . | . |
|
|
|
|  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
4 | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | |
|
|
|
|
|
. | . | . | 70 | . | . | . | . | . | . | . |
  |
  |   |
475 | . | . | . | . | 480 | . | . | . | . | . | . | . | . | . | 490 | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
V | E | T | P | E | Q | A | R | W | L | S | E | R | G | V | N | F | M |
Query Conservation |   |
|
|   |   |   |
|   |   |   |
|   |   |   |
|   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |   |   |
|   |   |   |   |   |
|
|
|
|   |
|
Template Sequence |   |
R | N | Q | L | E | V | A | K | A | V | V | A | N | G | A | N | L | V |
Template Known Secondary structure |   |
S |
|  |  |  |  |  |  |  |  |  |  | T | T |
| S |  |  |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
78 | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|