Job Description P76446 Confidence 100.00% Date Thu Jan 5 12:23:01 GMT 2012 Rank 7 Aligned Residues 227 % Identity 20% Template c2w27A_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:ykui protein; PDBTitle: crystal structure of the bacillus subtilis ykui protein,2 with an eal domain, in complex with substrate c-di-gmp and3 calcium Resolution 2.80 Å

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		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	M	T	A	I	K	R	E	Q	F	Y	V	A	Y	Q	P	V	V	D	T	Q	A	L	R	V	T	G	L	E	V	L	L	R	W	R	H	P	V	A	G	E	I	P	P	D	A	F	I	N	F	A	E	S	Q	K	M	I	V	P	L	T	Q	H	L	F	E	L	I	A	R	D	A	A	E	L	E	K	V	L
Query Conservation
Alig confidence																																																																														.	.	.	.
Template Conservation																																																																														.	.	.	.
Template Sequence		P	L	D	I	L	T	N	I	D	D	V	L	P	Y	Y	Q	A	I	F	S	A	E	E	Q	K	V	V	G	Y	E	V	L	G	R	I	L	A	D	S	E	I	Q	S	L	G	P	F	F	L	D	A	G	I	P	E	E	Y	K	L	E	V	D	N	R	I	I	R	Q	A	L	D	R	F	L	E	A	.	.	.	.
Template Known Secondary structure								T	G	G	G											T	T	T		S													S	S	S				S							T	T	S																					T	T	S	.	.	.	.
Template Predicted Secondary structure																																																																														.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		347	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.			.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.		.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
Predicted Secondary structure																		.	.																																					.
Query SS confidence																		.	.																																					.
Query Sequence		P	V	G	V	K	F	G	I	N	I	A	P	D	H	L	H	.	.	S	E	S	F	K	A	D	I	Q	K	L	L	T	S	L	P	A	H	H	F	Q	I	V	L	E	I	T	E	R	D	M	L	K	E	Q	E	.	A	T	Q	L	F	A	W	L	H	S	V	G	V	E	I	A	I	D	D	F	G	T	G	H	S
Query Conservation																		.	.																																					.
Alig confidence																		.	.																																					.
Template Conservation
Template Sequence		D	S	D	L	L	I	F	M	N	Q	D	A	N	L	L	M	L	D	H	G	E	S	F	L	E	L	L	K	E	Y	E	A	K	G	I	E	L	H	R	F	V	L	E	I	T	E	H	N	F	E	G	D	I	E	Q	L	Y	H	M	L	A	Y	Y	R	T	Y	G	I	K	I	A	V	D	N	I	G	K	E	S	S
Template Known Secondary structure			T	T													G	G	G	T	T														T			G	G	G							G	G	G			S														T	T	T									T	T	T	B
Template Predicted Secondary structure
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		424	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	I	Y	L	E	R	F	T	L	D	Y	L	K	I	D	R	G	F	I	N	A	I	G	T	E	T	I	T	S	P	V	L	D	A	V	L	T	L	A	K	R	L	N	M	L	T	V	A	E	G	V	E	T	P	E	Q	A	R	W	L	S	E	R	G	V	N	F	M	Q	G	Y	W	I	S	R	P	L	P
Query Conservation
Alig confidence																									.	.	.	.	.
Template Conservation																									.	.	.	.	.
Template Sequence		N	L	D	R	I	A	L	L	S	P	D	L	L	K	I	D	L	Q	A	L	S	P	S	.	.	.	.	.	Y	E	H	V	L	Y	S	I	S	L	L	A	R	K	I	G	A	A	L	L	Y	E	D	I	E	A	N	F	Q	L	Q	Y	A	W	R	N	G	G	R	Y	F	Q	G	Y	Y	L	V	S	P	S	E
Template Known Secondary structure												S							T	T					.	.	.	.	.																T										S										T	T						S	T	T	T				B	S
Template Predicted Secondary structure																									.	.	.	.	.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.						.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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