 |
Job Description | P76446 | Confidence | 25.96% | Date | Thu Jan 5 12:23:01 GMT 2012 |
Rank | 401 | Aligned Residues | 123 |
% Identity | 15% | Template | c2p0iA_ |
PDB info |
PDB header:lyase | Chain: A: PDB Molecule:l-rhamnonate dehydratase; |
PDBTitle: crystal structure of l-rhamnonate dehydratase from gibberella zeae
|
Resolution | 2.10 Å |
|
 |
  |   |
332 | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
F | E | L | I | A | R | D | A | A | E | L | E | K | V | L | P | V | G | V | K | F | G | I | N | I | A | P | D | H | L | H | S | E | S | F | K | A | D | I | Q | K | L | L | T | S | L | P | A | H | H | F | Q | I | V | L | E | I | T | E | R | D | M | L | K | E | Q | E | A | T | Q | L | F | A | W | L | H | S | V | G | V |
Query Conservation |   |
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|
|
|   |   |   |
|   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |
|
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
Template Conservation |   |
  |   |   |
|
|   |   |
|   |
|
|
|   |   |   |
|   |   |   |   |
|   |
|
|
|
|   |   |
| . | . |   |   |   |   |
|   |   |   |   |   |   |
|   |   |   |   | . | . | . | . |
|   |
|
|
| . | . |
|
|   |   |   |   |
|   |   |   |   |   |   |
|   |   |   |   |   | . |   |
|
Template Sequence |   |
L | R | K | N | V | E | F | L | R | K | H | R | E | A | V | G | P | D | F | P | I | X | V | D | C | Y | X | S | L | . |
. |
N | V | S | Y | T | I | E | L | V | K | A | C | L | D | L | N | . |
. |
. |
. |
I | N | W | W | E | . |
. |
E | C | L | S | P | D | D | T | D | G | F | A | L | I | K | R | A | H | P | . |
T | V |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| S | S | S |
|  |  |  |  |
| T | T |
|
| . | . |
|  |  |  |  |  |  |  |  |  |  | T | G | G | G |
| . | . | . | . |
| S |
|  |  | . | . |
|
| S |
| T | T |
| T | T |  |  |  |  |  |  |  |  |
| T | . | T | S |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
| . | . |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| . | . | . | . |
|  |  |  |  | . | . |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
| . |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
198 | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | |
|
. | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | |
|
|
|
. | . | . | . | . | |
|
. | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | |
. | . |
  |
  |   |
412 | . | . | . | . | . | . | . | 420 | . | . | . | . | . | . | . | . | . | 430 | . | . | |
. | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | . | . | . | . | . | . | . | 470 |
Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
| . |
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | I | A | I | D | D | F | G | T | G | H | S | A | L | I | Y | L | E | R | F | T | . |
L | D | Y | L | K | I | D | R | G | F | I | N | A | I | G | T | E | T | I | T | S | P | V | L | D | A | V | L | T | L | A | K | R | L | N | M | L | T |
Query Conservation |   |
  |
|   |
|
|
|
|
|   |   |   |   |   |
|   |   |
|   |   |
|   | . |   |
|   |
|
|
|
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |
|   |
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|
|
|
|   |
|   |   |   |   |
|
|
|
|   | . | . | . | . | . | . | . |   |   |
|
|
|   |
|
|   |   |   |
|
|   |   |
Template Sequence |   |
K | F | T | T | G | E | H | E | Y | S | R | Y | G | F | R | K | L | V | E | G | R | N | L | D | I | I | Q | P | D | V | X | W | L | G | G | L | T | E | . |
. |
. |
. |
. |
. |
. |
L | L | K | V | A | A | L | A | A | A | Y | D | V | P | V |
Template Known Secondary structure |   |
|  |  |  |
| T | T |
|
|  |  |  |  |  |  |  |  |  | T | T |
|
|
| S |  |  |
|
|
| T | T | T | S | S |
|  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  | T | T |
|
| B |
Template Predicted Secondary structure |   |
 |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |
|
|
|
|
|
|
|
|  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
269 | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | |
|
|
|
|
|
|
. | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|