 |
Job Description | P76446 | Confidence | 32.05% | Date | Thu Jan 5 12:23:01 GMT 2012 |
Rank | 358 | Aligned Residues | 125 |
% Identity | 12% | Template | c2oz3F_ |
PDB info |
PDB header:lyase | Chain: F: PDB Molecule:mandelate racemase/muconate lactonizing enzyme; |
PDBTitle: crystal structure of l-rhamnonate dehydratase from azotobacter2 vinelandii
|
Resolution | 2.00 Å |
|
 |
  |   |
332 | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
F | E | L | I | A | R | D | A | A | E | L | E | K | V | L | P | V | G | V | K | F | G | I | N | I | A | P | D | H | L | H | S | E | S | F | K | A | D | I | Q | K | L | L | T | S | L | P | A | H | H | F | Q | I | V | L | E | I | T | E | R | D | M | L | K | E | Q | E | A | T | Q | L | F | A | W | L | H | S | V | G | V |
Query Conservation |   |
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|
|
|   |   |   |
|   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |
|
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|   |   |   |
|   |
|
|
|   |   |   |
|   |   |   |   |
|   |
|
|
|
|   |   | . | . |   |   |   |   |   |
|   |   |   |   |   |   |
|   |   |   |   | . | . | . | . |
|   |   |
|
| . | . |
|
|   |   |   |   |
|   |   |   |   |   |   |
|
|   |   |   |   |   |
|
|
Template Sequence |   |
L | K | K | N | L | E | E | L | A | T | X | R | E | R | V | G | P | D | F | W | L | X | F | D | C | W | X | S | . |
. |
L | D | L | N | Y | A | T | R | L | A | R | G | A | R | E | Y | G | . |
. |
. |
. |
L | K | W | I | E | . |
. |
E | A | L | P | P | D | D | Y | W | G | Y | A | E | L | R | R | N | A | P | T | G | X |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| S | S | S |  |  |  |  |  |
| T | T |
| . | . |
|
|  |  |  |  |  |  |  |  |  |  |  | G | G | G | T | . | . | . | . |
|
|  |  |  | . | . |
|
| S |
| T | T |
|  |  |  |  |  |  |  |  |  |  | S |
| T | T |
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
| . | . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| . | . | . | . |
|  |  |  |  | . | . |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
191 | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | |
|
. | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | |
|
|
|
. | . | . | . | 240 | |
|
. | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . |
  |
  |   |
412 | . | . | . | . | . | . | . | 420 | . | . | . | . | . | . | . | . | . | 430 | . | . | |
. | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | . | . | . | . | . | . | . | 470 | . |
Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
| . |
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | I | A | I | D | D | F | G | T | G | H | S | A | L | I | Y | L | E | R | F | T | . |
L | D | Y | L | K | I | D | R | G | F | I | N | A | I | G | T | E | T | I | T | S | P | V | L | D | A | V | L | T | L | A | K | R | L | N | M | L | T | V |
Query Conservation |   |
  |
|   |
|
|
|
|
|   |   |   |   |   |
|   |   |
|   |   |
|   | . |   |
|   |
|
|
|
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |
|   |
|   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |
|
|
|
|   |
|   |   |   |   |
|
|
|
|   | . | . | . | . | . | . | . |   |   |   |
|
|   |   |
|   |   |   |
|
|   |
|   |
Template Sequence |   |
X | V | T | T | G | E | H | E | A | T | R | W | G | F | R | X | L | L | E | X | G | C | C | D | I | I | Q | P | D | V | G | W | C | G | G | V | T | E | . |
. |
. |
. |
. |
. |
. |
L | L | K | I | S | A | L | A | D | A | H | N | A | L | V | V |
Template Known Secondary structure |   |
 |  |  |  |
| T | T |
|
|  |  |  |  |  |  |  |  |  |  | T | T |
|
| S |  |  |
|
|
| T | T | T | S | S |
|  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |
|
Template Predicted Secondary structure |   |
 |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
263 | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | |
|
|
|
|
|
|
. | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|