Return to main results Retrieve Phyre Job Id

Job DescriptionP15288
Confidence100.00%DateThu Jan 5 11:34:45 GMT 2012
Rank19Aligned Residues337
% Identity19%Templatec3ct9B_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:acetylornithine deacetylase; PDBTitle: crystal structure of a putative zinc peptidase (np_812461.1) from2 bacteroides thetaiotaomicron vpi-5482 at 2.31 a resolution
Resolution2.31 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   910.........20.........30.........40.........50.........60.........70.........80........
Predicted Secondary structure 



































Query SS confidence 















































































Query Sequence  PQPLWDIFAKICSIPHPSYHEEQLAEYIVGWAKEKGFHVERDQVGNILIRKPATAGMENRKPVVLQAHLDMVPQKNNDTV
Query Conservation            
  


 
  
      
   
   
  
  
  


               
 
  
 



       
Alig confidence 






































..









...


















.......
Template Conservation      
 

  

 


 
  
      
   
   
  
..    
 
   ... 
    
 


 

 
 

.......
Template Sequence  TAEAVSLLKSLISIPSISREETQAADFLQNYIEAEGXQT. . GRKGNNVWCL. . . SPXFDKPTILLNSHIDTVK. . . . . . .
Template Known Secondary structure  S

BTT

TTT


..TT...
TT





B

.......
Template Predicted Secondary structure 











..



...










.......
Template SS confidence 















































































   910.........20.........30.........40....... ..50....... ..60.........70......
 
   8990.........100.........110.........120.........130.........140....... ..150.........160.......
Predicted Secondary structure 





























.









Query SS confidence 


























































.



















Query Sequence  HDFTKDPIQPYIDGEWVKARGTTLGADNGIGMASALAVLADENVVHGPLEVLLTMTEEA. GMDGAFGLQGNWLQADILIN
Query Conservation    
  


      
 
 


     
        
  
         
       

 .
  
                
Alig confidence  ..








































.














.



















Template Conservation  ..    
       
 
 


  
 
                 .            

     
              
 
Template Sequence  . . PVKDPFTPREENGKLYGLGSNDAGASVVSLLQVFLQLCRTS. QNYNLIYLASCEEEVSGKEGIESVLPGLPPVSFAIV
Template Known Secondary structure  ..



SS

TT
TTTTTTTTS
.
SS

TTTT
TTSGGGTTTTS


S
Template Predicted Secondary structure  ..














.
















Template SS confidence 















































































   7980.........90.........100.........110......... 120.........130.........140.........150.....
 
   168.170.........180.........190.........200.........210.........220.........230.........240.......
Predicted Secondary structure 



































Query SS confidence 















































































Query Sequence  TDSEEEGEIYMGCAGGIDFTSNLHLDREAVPAGFETFKLTLKGLKGGHSGGEIHVGLGNANKLLVRFLAGHAEELDLRLI
Query Conservation   
                              
     
   
    
           

         
         
Alig confidence 






...................
















.










...





















Template Conservation   
     ...................
               
.   

    
 ...


      
  
         
Template Sequence  GEPTEXQ. . . . . . . . . . . . . . . . . . . PAIAEKGLXVLDVTATG. KAGHAARDEGD. . . NAIYKVLNDIAWFRDYRFEKES
Template Known Secondary structure 


STT
...................




.B

BTTSS

B...
TTGGG


S

B
Template Predicted Secondary structure 





....................










...




Template SS confidence 















































































   160...... ...170.........180... ......190.... .....200.........210......
 
   248.250.........260.........270.........280.........290.........300.........310.........320.......
Predicted Secondary structure 





























Query SS confidence 















































































Query Sequence  DFNGGTLRNAIPREAFATIAVAADKVDVLKSLVNTYQEILKNELAEKEKNLALLLDSVANDKAALIAKSRDTFIRLLNAT
Query Conservation      
                                                                           
Alig confidence 









......................................................................
Template Conservation            ......................................................................
Template Sequence  PLLGPVKXSV. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  TTTBS
......................................................................
Template Predicted Secondary structure 





......................................................................
Template SS confidence 















































































   217..220......
 
   328.330.........340.........350.........360.........370.........380.........390.........400.......
Predicted Secondary structure 








































Query SS confidence 















































































Query Sequence  PNGVIRNSDVAKGVVETSLNVGVVTMTDNNVEIHCLIRSLIDSGKDYVVSMLDSLGKLAGAKTEAKGAYPGWQPDANSPV
Query Conservation    
                                  
             
          

                
Alig confidence  ...............









































..




















Template Conservation  ...............    

   
 

         
             
     ..                     
Template Sequence  . . . . . . . . . . . . . . . TVINAGTQHNVVPDKCTFVVDIRSNELYSNEDLFAEIRKHIA. . CDAKARSFRLNSSRIDEKHPF
Template Known Secondary structure  ...............
SSTTB




TT

TT

..SS
S





TTS
Template Predicted Secondary structure  ...............












..









Template SS confidence 















































































   227..230.........240.........250.........260........ .270.........280.........
 
   408.410.........420.........430.........440.........450.. .......460.........470.........480..
Predicted Secondary structure 















.








Query SS confidence 












































.





























Query Sequence  MHLVRETYQRLFNKTPNIQIIHAGLECGLFKKPYPEMDMVSIGPT. ITGPHSPDEQVHIESVGHYWTLLTELLKEI
Query Conservation 
  
  
     
         



          
  
  

 .    
   
 
 
         
   
  
Alig confidence 









..........












..









.





























Template Conservation            ..........  
  
       ..
      
 
     
   
 
    
         

  
Template Sequence  VQKAVKXGRI. . . . . . . . . . PFGSPTLSDQALX. . SFASVKIGPGRSSRSHTAEEYIXLKEIEEAIGIYLDLLDGL
Template Known Secondary structure  TT

..........

S

GGGG
..
S

SS
GGGTTSTT
TT
Template Predicted Secondary structure  ..........






..















Template SS confidence 











































































   290......... 300.........310.. .......320.........330.........340.........350...
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions