Job Description P77744 Confidence 99.78% Date Thu Jan 5 12:32:25 GMT 2012 Rank 18 Aligned Residues 207 % Identity 18% Template d1i6aa_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 2.30

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Q	L	A	G	Q	I	N	I	G	M	G	A	S	I	S	R	S	L	M	P	A	V	I	S	R	F	H	Q	Q	H	P	Q	V	K	V	R	I	M	E	G	Q	L	V	S	M	I	N	E	L	R	Q	G	E	L	D	F	T	I	N	T	Y	Y	Q	G	P	Y	D	H	E	F	T	F	E	K	L	L	E	K	Q
Query Conservation
Alig confidence																																																																.	.
Template Conservation																																																																.	.
Template Sequence		E	T	M	S	G	P	L	H	I	G	L	I	P	T	V	G	P	Y	L	L	P	H	I	I	P	M	L	H	Q	T	F	P	K	L	E	M	Y	L	H	E	A	Q	T	H	Q	L	L	A	Q	L	D	S	G	K	L	D	A	V	I	L	A	L	.	.	V	K	E	S	E	A	F	I	E	V	P	L	F	D	E	P
Template Known Secondary structure			T	T										T	T	T																	T	T																				T	S		S							.	.		G	G	G	T	T	S
Template Predicted Secondary structure																																																																.	.
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.			.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		171	.	.	.	.	.	.	.	.	180	.	.	.	.			.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.
Query SS confidence																.	.
Query Sequence		F	A	I	F	C	R	P	G	H	P	A	I	G	A	.	.	R	S	I	K	Q	L	L	D	Y	S	W	T	M	P	T	P	H	G	S	Y	Y	K	Q	L	S	E	L	L	D	D	Q	A	Q	T	P	Q	V	G	V	V	C	E	T	F	S	A	C	I	S	L	V	A	K	S	D	F	L	S	K	L	P	E	E	M
Query Conservation																.	.
Alig confidence																.	.
Template Conservation
Template Sequence		M	L	L	A	I	Y	E	D	H	P	W	A	N	R	E	A	V	P	M	A	D	L	A	G	E	K	L	L	M	L	E	D	G	H	C	L	R	D	Q	A	M	G	F	C	F	E	A	G	A	D	E	D	T	H	F	R	A	T	S	L	E	T	L	R	N	M	V	A	A	G	S	G	I	T	L	L	P	A	L	A
Template Known Secondary structure								T	T	S	G	G	G	G		S				G	G	G	G	T	T	S						T	T	T	T		S	S		T	T	S	S		S	S		T	T	S					T	T	T	T	S											T	T	S		B					G	G	G
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	C	D	P	L	H	G	Q	G	L	V	M	L	P	V	S	E	I	L	P	K	A	A	Y	Y	L	I	Q	R	R	D	S	R	Q	T	P	L	T	A	S	L	I	T	Q	F	R	R	E	C	G	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	P	P	E	R	K	R	D	G	V	V	Y	L	P	A	I	K	P	E	P	R	R	T	I	G	L	V	Y	R	P	G	S	P	L	R	S	R	Y	E	Q	L	A	E	A	I	R	A	R	M	D	G
Template Known Secondary structure		S		S	S	S			T	T								S	S												T	T		T	T																T	T
Template Predicted Secondary structure
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions