Job Description P77744 Confidence 77.41% Date Thu Jan 5 12:32:25 GMT 2012 Rank 219 Aligned Residues 100 % Identity 13% Template c2xroE_ PDB info PDB header:dna-binding protein/dna Chain: E: PDB Molecule:hth-type transcriptional regulator ttgv; PDBTitle: crystal structure of ttgv in complex with its dna operator Resolution 3.40 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20				.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure															.	.	.
Query SS confidence															.	.	.
Query Sequence		H	Q	I	R	A	F	V	E	V	A	R	Q	G	.	.	.	S	I	R	G	A	S	R	M	L	N	M	S	Q	P	A	L	S	K	S	I	Q	E	L	E	E	G	L	A	A	Q	L	F	F	R	R	S	K	G	V	T	L	T	D	A	G	E	S	F	Y	Q	H	A	S	L	I	L	E	E	L	R	A	A	Q	E
Query Conservation															.	.	.
Alig confidence															.	.	.																								.																															.	.
Template Conservation																																									.																															.	.
Template Sequence		R	A	A	S	I	M	R	A	L	G	S	H	P	H	G	L	S	L	A	A	I	A	Q	L	V	G	L	P	R	S	T	V	Q	R	I	I	N	A	L	.	E	E	E	F	L	V	E	A	L	G	P	A	G	G	F	R	L	G	P	A	L	G	Q	L	I	N	Q	A	Q	T	.	.	D	I	L	S	L	V	K	P
Template Known Secondary structure														T	T		B									S	S														.		T	T	T	S					S	S	S	S						T								T	T	T	T	.	.	T
Template Predicted Secondary structure																																									.																															.	.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.		.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.			.	.	90	.	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	R	Q	R	Q	G	Q	L	A	G	Q	I	N	I	G	M	G	A	S	I	S	R	S	L	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	L	R	S	L	A	E	E	L	D	E	S	V	S	L	A	S	L	A	G	D	K	I	Y	V	L
Template Known Secondary structure										S		S									T	T
Template Predicted Secondary structure
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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