Return to main results Retrieve Phyre Job Id

Job DescriptionP77744
Confidence38.06%DateThu Jan 5 12:32:25 GMT 2012
Rank355Aligned Residues168
% Identity11%Templatec2rc9A_
PDB info PDB header:membrane proteinChain: A: PDB Molecule:glutamate [nmda] receptor subunit 3a; PDBTitle: crystal structure of the nr3a ligand binding core complex with acpc at2 1.96 angstrom resolution
Resolution1.96 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   128.130.........140.........150 .........160.... .....170.........180.........190. ........200...
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Query Sequence  IMEGQLVSMINELRQGELDFTIN. TYYQGPYDHEFTFE. KLLEKQFAIFCRPGHPAIGARSIKQLL. . DYSWTMPTPHGS
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Template Sequence  WKNGHWTGLVGDLLSGTANMAVTSFSINTARSQVIDFTSPFFSTSLGILVRTRGTELSGIHDPKLHHPSQGFRFGTVRES
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   100.........110.........120.........130.........140.........150.........160.........170.........
 
   204.....210.........220.........230........ .240.........250.........260.........270.........
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Query Sequence  YYKQLSELLDDQAQTPQVGVVCETFSACISLVAKS. . . . DFLSKLPEEMGCDPLHGQGLVMLPVSEILPKAAYYLIQRRD
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Template Sequence  SAEDYVRQSFPEMHEYMRRYNVPATPDGVQYLKNDPEKLDAFIMDKALLDYEVSIDADCKLLTVGKPFAIEGYGIGLPPN
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   180.........190.........200.........210.........220.........230.........240.........250.........
 
   280.........290.....
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Query Sequence  SRQTPLTASLITQFRR
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Template Sequence  SPLTSNISELISQYKS
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TT
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   260.........270.....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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