Job Description P77744 Confidence 99.52% Date Thu Jan 5 12:32:25 GMT 2012 Rank 36 Aligned Residues 184 % Identity 16% Template c2qsxB_ PDB info PDB header:transcription Chain: B: PDB Molecule:putative transcriptional regulator, lysr family; PDBTitle: crystal structure of putative transcriptional regulator lysr from2 vibrio parahaemolyticus Resolution 1.64 Å

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		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	I	N	I	G	M	G	A	S	I	S	R	S	L	M	P	A	V	I	S	R	F	H	Q	Q	H	P	Q	V	K	V	R	I	M	E	G	Q	L	V	S	M	I	N	E	L	R	Q	G	E	L	D	F	T	I	N	T	Y	Y	Q	G	P	Y	D	H	E	F	T	F	E	K	L	L	E	K	Q	F	A	I	F	C
Query Conservation
Alig confidence																																							.	.	.	.	.	.	.	.	.
Template Conservation																																							.	.	.	.	.	.	.	.	.
Template Sequence		L	L	V	V	D	V	T	P	S	F	A	S	L	W	L	V	P	N	I	N	D	F	H	Q	R	H	P	N	I	R	V	K	I	L	T	G	D	.	.	.	.	.	.	.	.	.	G	A	V	G	E	S	D	L	H	V	R	C	L	P	L	S	T	H	Y	E	Y	S	Q	L	L	C	E	E	T	L	L	L	I	G
Template Known Secondary structure															T													T	T										.	.	.	.	.	.	.	.	.	S						S								S		S			T	T
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.										.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	P	G	H	P	A	I	G	A	R	S	I	K	Q	L	L	D	Y	S	W	T	M	P	T	P	H	G	S	Y	Y	K	Q	L	S	E	L	L	D	D	Q	A	Q	T	P	Q	V	G	V	V	C	E	T	F	S	A	C	I	S	L	V	A	K	S	D	F	L	S	K	L	P	E	E	M	G	C	D	P	L	H	G
Query Conservation
Alig confidence							.	.	.	.	.																.	.	.	.
Template Conservation							.	.	.	.	.																.	.	.	.
Template Sequence		N	T	N	L	P	.	.	.	.	.	K	N	Q	A	I	S	H	Y	P	F	I	P	Q	T	T	.	.	.	.	R	P	Q	L	W	E	Q	F	K	Q	E	N	D	I	T	Y	H	S	V	G	F	E	H	F	Y	L	A	C	E	A	V	R	X	E	K	G	L	A	L	L	P	D	F	X	A	Q	F	S	I	L	R
Template Known Secondary structure			T	T	S		.	.	.	.	.				G	G	G	G	S		B			B	T	T	.	.	.	.		T														B		S			B	S	S										T	T			B														T
Template Predicted Secondary structure							.	.	.	.	.																.	.	.	.
Template SS confidence
		92	.	.	.	.						.	.	.	100	.	.	.	.	.	.	.	.	.	110	.					.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	G	L	V	M	L	P	V	S	E	I	L	P	K	A	A	Y	Y	L	I	Q	R	R	D	S	R	Q	T	P	L	T	A	S	L	I	T	Q	F	R	R	E	C
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	D	I	Q	H	I	G	N	L	K	L	H	S	G	Y	G	Y	Y	V	V	I	P	N	F	R	L	T	S	R	K	V	A	L	F	H	D	W	L	K	D	K	L
Template Known Secondary structure		T	S																					G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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