Return to main results Retrieve Phyre Job Id

Job DescriptionP38052
Confidence99.88%DateThu Jan 5 11:57:53 GMT 2012
Rank8Aligned Residues141
% Identity21%Templated2j2zb1
SCOP infoCommon fold of diphtheria toxin/transcription factors/cytochrome f Bacterial adhesins Pilus subunits
Resolution2.3

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2930.........40.........50.........60.........70.........80.... .....90.........100
Predicted Secondary structure 























........







Query SS confidence 























































. . . . . . . .















Query Sequence  INLHGNVVDFSCTVNTADIDKTVDLGRWPTTQLLNAGDTTALVPFSLRLEGCPPGS. . . . . . . . VAILFTGTPASDTNLL
Query Conservation 
 
 
 
   

 
        
 

 
                      
     ........  
             
Alig confidence 






































.















........















Template Conservation 
 
 
 
   

 
        



 
           .    
   
  
                            
Template Sequence  AAFHGEVVRPACTLAMEDAWQIIDMGETPVRDLQNGFSG. PERKFSLRLRNCEFNSQGGNLFSDSRIRVTFDGVRGETPD
Template Known Secondary structure 
SS









SSTT





S

TTS

.

SS

TTTTTTTSS
B
SSTT
Template Predicted Secondary structure 


















.























Template SS confidence 















































































   25....30.........40.........50.........60... ......70.........80.........90.........100...
 
   101........110.........120.........130.........140.........150.........160.........170.
Predicted Secondary structure 





























Query SS confidence 






































































Query Sequence  ALDDPAMAQTVAIELRNSDRSRLALGEASPTEEVDANGNVTLNFFANYRALASGVRPGVAKADAIFMINYN
Query Conservation         
 



 
       
                  
   
        
  
   
  

 
 

Alig confidence 


































.


































Template Conservation         
 



 
       
            .         
        
  
   
  

 
 

Template Sequence  KFNLSGQAKGINLQIADVRGNIARAGKVMPAIPLT. GNEEALDYTLRIVRNGKKLEAGNYFAVLGFRVDYE
Template Known Secondary structure 
B

S
BS
TT

B

TT
B





S.TT
S
SS

B
S




Template Predicted Secondary structure 

















.










Template SS confidence 






































































   104.....110.........120.........130........ .140.........150.........160.........170...
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions