Job Description P0AEJ4 Confidence 100.00% Date Thu Jan 5 11:23:28 GMT 2012 Rank 4 Aligned Residues 266 % Identity 13% Template c1y8oA_ PDB info PDB header:transferase Chain: A: PDB Molecule:[pyruvate dehydrogenase [lipoamide]] kinase isozyme 3; PDBTitle: crystal structure of the pdk3-l2 complex Resolution 2.48 Å

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		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	W	L	F	I	R	I	Q	N	R	P	L	V	D	L	E	H	A	A	L	Q	V	G	K	G	I	I	P	P	P	L	R	E	Y	G	A	S	E	V	R	S	V	T	R	A	F	N	H	M	A	A	G	V	K	Q	L	A	D	D	R	T	L	L	M	A	G	V	S	H	D	L	R	T	P	L	T	R	I	R	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	M	F	L	R	K	E	L	P	V	R	L	A	N	T	M	R	E	V	N	L	L	P	D	N	L	L	N	R	P	S	V	G	L	V	Q	S	W	Y	M	Q	S	F	L	E	L	L	E	Y	E	N	K	S	P	E	D	P	Q	V	L	D	N	F	L	Q	V	L	I	K	V	R	N	R	H	N	D	V	V	P	T
Template Known Secondary structure																					T	T	S						T	S																			G	G	G	G			T	T																			G	G	G
Template Predicted Secondary structure
Template SS confidence
		46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
		255	.	.	.	.														260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.									.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.
Query Sequence		A	T	E	M	M	.	.	.	.	.	.	.	.	.	.	.	.	.	S	E	Q	D	G	Y	L	A	E	S	I	N	K	D	I	E	E	C	N	A	I	I	E	Q	F	I	D	Y	L	R	T	G	Q	E	M	P	M	E	M	.	.	.	.	.	.	.	.	A	D	L	N	A	V	L	G	E	V	I	A	A	E	S
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	A	Q	G	V	I	E	Y	K	E	K	F	G	F	D	P	F	I	S	T	N	I	Q	Y	F	L	D	R	F	Y	T	N	R	I	S	F	R	M	L	I	N	Q	H	T	L	L	F	G	G	D	T	N	P	V	H	P	K	H	I	G	S	I	D	P	T	C	N	V	A	D	V	V	K	D	A	Y	E	T	A	K
Template Known Secondary structure																																																	S			S	S		S	S	T	T	S	B	T	T	B
Template Predicted Secondary structure
Template SS confidence
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
		314	.	.	.	.													.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.											.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.
Query Sequence		G	Y	E	R	E	.	.	.	.	.	.	.	.	.	.	.	.	I	E	T	A	L	Y	P	G	S	I	E	V	K	M	H	P	L	S	I	K	R	A	V	A	N	M	V	V	N	A	A	R	Y	.	.	.	.	.	.	.	.	.	.	G	N	G	W	I	K	V	S	S	G	T	E	P	N	R	A	W	F	Q	V
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	L	C	E	Q	Y	Y	L	V	A	P	E	L	E	V	E	E	F	N	A	K	A	P	D	K	P	I	Q	V	V	Y	V	P	S	H	L	F	H	M	L	F	E	L	F	K	N	S	M	R	A	T	V	E	L	Y	E	D	R	K	E	G	Y	P	A	V	K	T	L	V	T	L	G	K	E	D	L	S	I	K	I
Template Known Secondary structure									S												T	T	S	T	T	S																															T	T		S	S													S	S
Template Predicted Secondary structure
Template SS confidence
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
		372	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.		.	.	440	.	.	.	.	.	.	.
Predicted Secondary structure																																																																				.
Query SS confidence																																																																				.
Query Sequence		E	D	D	G	P	G	I	A	P	E	Q	R	K	H	L	F	Q	P	F	V	R	G	D	S	A	R	T	I	S	G	T	G	L	G	L	A	I	V	Q	R	I	V	D	N	H	N	G	M	L	E	L	G	T	S	E	R	G	G	L	S	I	R	A	W	L	P	.	V	P	V	T	R	A	Q	G	T	T
Query Conservation																																																																				.
Alig confidence																								.	.	.	.	.	.	.																																						.
Template Conservation																								.	.	.	.	.	.	.
Template Sequence		S	D	L	G	G	G	V	P	L	R	K	I	D	R	L	F	N	Y	M	Y	S	P	.	.	.	.	.	.	.	L	F	G	Y	G	L	P	I	S	R	L	Y	A	R	Y	F	Q	G	D	L	K	L	Y	S	M	E	G	V	G	T	D	A	V	I	Y	L	K	A	L	S	S	E	S	F	E	R	L	P
Template Known Secondary structure					S									G	G	G	G		T	T	T			.	.	.	.	.	.	.			T	T												T	T									T	T	T										S		G	G	G		B
Template Predicted Secondary structure																								.	.	.	.	.	.	.
Template SS confidence
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.								.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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