Job Description P42624 Confidence 96.19% Date Thu Jan 5 12:01:54 GMT 2012 Rank 66 Aligned Residues 197 % Identity 16% Template c3qacA_ PDB info PDB header:plant protein Chain: A: PDB Molecule:11s globulin seed storage protein; PDBTitle: structure of amaranth 11s proglobulin seed storage protein from2 amaranthus hypochondriacus l. Resolution 2.27 Å

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		28	.	30	.	.	.	.	.	.	.	.			.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.												.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure													.	.																																						.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.																																						.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	Y	F	D	P	K	L	L	G	Y	A	.	.	S	L	R	V	L	N	Q	E	V	L	A	P	G	A	A	F	Q	P	R	T	Y	P	K	V	D	I	L	N	V	I	L	D	G	E	A	E	Y	.	.	.	.	.	.	.	.	.	.	.	R	D	S	E	G	N	H	V	Q	A	S	A	G	E	A	L	L	L	S
Query Conservation													.	.																																						.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.						.														.																		.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.														.
Template Sequence		E	V	W	D	S	N	E	Q	E	F	R	C	A	G	V	S	V	I	.	R	R	T	I	E	P	H	G	L	L	L	P	S	.	F	T	S	A	P	E	L	I	Y	I	E	Q	G	N	G	I	T	G	M	M	I	P	G	C	P	E	T	Y	Q	D	Q	H	Q	K	I	R	H	L	R	E	G	D	I	F	A	M	P
Template Known Secondary structure						T	T	S							T					.						T	T							.			S	S																		T	T																	T	T
Template Predicted Secondary structure																				.														.
Template SS confidence
		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.		.	.	.	.	.	.	60	.	.	.	.	.	.		.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.		.	.	.	.	130
Predicted Secondary structure																																	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	Q	P	G	V	S	Y	S	E	H	N	L	S	K	D	K	P	L	T	R	M	Q	L	W	L	D	A	C	P	Q	R	.	E	N	P	L	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.							.																				.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.							.
Template Sequence		A	G	V	.	.	S	H	W	A	Y	N	.	N	G	D	Q	P	L	V	A	V	I	L	I	D	T	A	N	H	A	N	Q	L	D	K	N	F	P	T	R	F	Y	L	A	G	K	P	Q	Q	E	H	S	N	T	G	N	I	F	R	G	F	E	T	R	L	L	A	E	S	F	G	V	S	E	E	I	A	Q	K	L
Template Known Secondary structure		T	T		.	.							.		S	S	S										T	T	S	T	T			S		S	S	S						S	S	S					S							G	G	G	G	S										T
Template Predicted Secondary structure					.	.							.
Template SS confidence
		144	.	.			.	.	.	150	.	.		.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.																																.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.		.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Query Sequence		Q	K	L	A	L	N	M	G	K	Q	Q	L	I	A	S	P	E	G	A	M	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	L	Q	L	R	Q	Q	V	W	L	H	H	I	V	L	D	K	G	E	S	A	N	F	Q	L	.	H	G
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Template Conservation
Template Sequence		Q	A	E	Q	D	D	R	G	N	I	V	R	V	E	G	L	H	T	I	C	S	A	R	L	A	V	N	V	D	D	P	S	K	A	D	V	Y	T	P	E	A	G	R	L	T	T	V	N	S	F	N	L	P	I	L	R	H	L	R	L	S	A	A	K	G	V	L	Y	R	N	A	M	M	A	P	H	Y	N	L	N
Template Known Secondary structure			T	T	T			S		S										T	T	T	S						T	T		T	T	T		S				T	T	T								T	T	T	S	T	T					T										T	T									S	S
Template Predicted Secondary structure
Template SS confidence
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
		179	180	.	.	.	.	.	.	.	.	.	190	.	.						.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.		.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.																														.
Query SS confidence																.	.	.	.	.																														.
Query Sequence		P	R	A	Y	L	Q	S	I	H	G	K	F	H	A	.	.	.	.	.	L	T	H	H	E	E	K	A	A	L	T	C	G	D	G	A	F	I	R	D	E	A	N	I	T	L	V	A	D	.	S	P	L	R	A	L	L	I
Query Conservation																.	.	.	.	.																														.
Alig confidence																.	.	.	.	.																														.
Template Conservation
Template Sequence		A	H	N	I	M	Y	C	V	R	G	R	G	R	I	Q	I	V	N	D	Q	G	Q	S	V	F	D	E	E	L	S	R	G	Q	L	V	V	V	P	Q	N	F	A	I	V	K	Q	A	F	E	D	G	F	E	W	V	S	F
Template Known Secondary structure																				T	T	S										T	T							T	T
Template Predicted Secondary structure
Template SS confidence
		344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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