Job Description P42624 Confidence 97.03% Date Thu Jan 5 12:01:54 GMT 2012 Rank 50 Aligned Residues 196 % Identity 15% Template c3kglB_ PDB info PDB header:plant protein Chain: B: PDB Molecule:cruciferin; PDBTitle: crystal structure of procruciferin, 11s globulin from2 brassica napus Resolution 2.98 Å

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		28	.	30	.	.	.	.	.	.	.				.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.									.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure												.	.	.																																							.	.	.	.	.	.	.	.
Query SS confidence												.	.	.																																							.	.	.	.	.	.	.	.
Query Sequence		H	Y	F	D	P	K	L	L	G	Y	.	.	.	A	S	L	R	V	L	N	Q	E	V	L	A	P	G	A	A	F	Q	P	R	T	Y	P	K	V	D	I	L	N	V	I	L	D	G	E	A	E	Y	.	.	.	.	.	.	.	.	R	D	S	E	G	N	H	V	Q	A	S	A	G	E	A	L	L	L	S	T	Q
Query Conservation												.	.	.																																							.	.	.	.	.	.	.	.
Alig confidence												.	.	.		.	.																		.																		.	.	.	.	.	.	.	.
Template Conservation																.	.																		.
Template Sequence		E	V	W	D	H	H	A	P	Q	L	R	C	S	G	.	.	V	S	F	V	R	Y	I	I	E	S	K	G	L	Y	L	P	S	.	F	F	S	T	A	K	L	S	F	V	A	K	G	E	G	L	M	G	R	V	V	P	G	C	A	E	D	M	H	Q	K	V	E	H	I	R	T	G	D	T	I	A	T	H	P	G
Template Known Secondary structure						T	T	S							T	.	.										T	T							.			S	S									S									S	S	S						S							T	T							T	T
Template Predicted Secondary structure																.	.																		.
Template SS confidence
		29	30	.	.	.	.	.	.	.	.	.	40	.	.			.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.		.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure																															.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																															.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	G	V	S	Y	S	E	H	N	L	S	K	D	K	P	L	T	R	M	Q	L	W	L	D	A	C	P	Q	R	.	E	N	P	L	I	Q	K	L	A	L	N	M	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																															.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.							.																				.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.							.
Template Sequence		V	.	.	A	Q	W	F	Y	N	.	D	G	N	Q	P	L	V	I	V	S	V	L	D	L	A	S	H	Q	N	Q	L	D	R	N	P	R	P	F	Y	L	A	G	N	N	P	Q	G	Q	V	W	I	E	G	R	E	Q	Q	P	Q	K	N	I	L	N	G	F	T	P	E	V	L	A	K	A	F	K	I	D	V	R
Template Known Secondary structure			.	.							.		S	S	S										S	S	S	T	T			S		S	S						S	S			B	T	T			T	T	S	T	T			S			B			G	G	G	G	S										T
Template Predicted Secondary structure			.	.							.
Template SS confidence
		161			.	.	.	.	.	.		.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		139	140	.	.	.	.	.	.	.	.	.	150	.																																																							.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	Q	Q	L	I	A	S	P	E	G	A	M	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	L	Q	L	R	Q	Q	V	W	L	H	H	I
Query Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	A	Q	Q	L	Q	N	Q	Q	D	N	R	G	N	I	I	R	V	Q	G	P	F	S	V	I	R	P	P	L	R	S	E	T	I	C	S	A	R	C	T	D	N	L	D	D	P	S	N	A	D	V	Y	K	P	Q	L	G	Y	I	S	T	L	N	S	Y	D	L	P	I	L	R	F	L	R	L	S	A	L	R	G
Template Known Secondary structure						T	T	T	T	T			S		S					S	S				S	S				S						S	S							S	S		G	G	G		S				T	T	T								T	T	T		T	T					T
Template Predicted Secondary structure
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.		.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200						.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.		.	.	.	.	.	.	.	.
Predicted Secondary structure														.																									.	.	.	.	.																						.
Query SS confidence														.																									.	.	.	.	.																						.
Query Sequence		V	L	D	K	G	E	S	A	N	F	Q	L	.	H	G	P	R	A	Y	L	Q	S	I	H	G	K	F	H	A	L	T	H	H	E	E	K	A	.	.	.	.	.	A	L	T	C	G	D	G	A	F	I	R	D	E	A	N	I	T	L	V	A	D	.	S	P	L	R	A	L	L	I
Query Conservation														.																									.	.	.	.	.																						.
Alig confidence														.																									.	.	.	.	.																						.
Template Conservation
Template Sequence		S	I	R	Q	N	A	M	V	L	P	Q	W	N	A	N	A	N	A	V	L	Y	V	T	D	G	E	A	H	V	Q	V	V	N	D	N	G	D	R	V	F	D	G	Q	V	S	Q	G	Q	L	L	S	I	P	Q	G	F	S	V	V	K	R	A	T	S	E	Q	F	R	W	I	E	F
Template Known Secondary structure					T	T									S	S										S									T	T	S										T	T							T	T									S	S
Template Predicted Secondary structure
Template SS confidence
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions