Job Description P42624 Confidence 96.00% Date Thu Jan 5 12:01:54 GMT 2012 Rank 69 Aligned Residues 196 % Identity 12% Template c3ehkC_ PDB info PDB header:plant protein Chain: C: PDB Molecule:prunin; PDBTitle: crystal structure of pru du amandin, an allergenic protein2 from prunus dulcis Resolution 3.20 Å

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		28	.	30	.	.	.	.	.						.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.																.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	Y	F	D	P	K	L	L	.	.	.	.	.	G	Y	A	S	L	R	V	L	N	Q	E	V	L	A	P	G	A	A	F	Q	P	R	T	Y	P	K	V	D	I	L	N	V	I	L	D	G	E	A	E	Y	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	S	E	G	N	H	V	Q	A	S	A
Query Conservation										.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.									.	.	.	.											.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.											.
Template Sequence		E	T	W	N	F	N	Q	G	D	F	Q	C	A	G	V	A	A	S	R	I	T	.	.	.	.	I	Q	R	N	G	L	H	L	P	S	.	Y	S	N	A	P	Q	L	I	Y	I	V	Q	G	R	G	V	L	G	A	V	F	S	G	C	P	E	T	F	E	E	S	Q	L	D	R	H	Q	K	T	R	R	I	R	E
Template Known Secondary structure						S		S							T								.	.	.	.			T	T							.			S	S																		T	T														S							T
Template Predicted Secondary structure																							.	.	.	.											.
Template SS confidence
		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.					.	.	.	.	.	60	.	.	.	.		.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	E	A	L	L	L	S	T	Q	P	G	V	S	Y	S	E	H	N	L	S	K	D	K	P	L	T	R	M	Q	L	W	L	D	A	C	P	Q	R	E	N	P	L	I	Q	K	L	A	L	N	M	G	K	Q	Q	L	I	A	S	P	E	G	A	M	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.
Template Sequence		G	D	V	V	A	I	P	A	G	V	.	.	A	Y	W	S	Y	N	D	G	D	Q	E	L	V	A	V	N	L	F	H	V	S	S	D	H	N	Q	L	D	Q	N	P	R	K	F	Y	L	A	G	N	P	E	N	E	F	N	Q	Q	G	Q	G	N	N	V	F	S	G	F	N	T	Q	L	L	A	Q	A	L	N	V
Template Known Secondary structure		T							T	T		.	.								S	S	S										T	T	S	T	T			S		S	S						S	S	S					S	S	S		T	T					S	G	G	G	S										T	S
Template Predicted Secondary structure												.	.
Template SS confidence
		179	180	.	.	.	.	.	.	.	.			.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
																																																																								152	.	.	.	.	.	.	.	160	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	L	Q	L	R	Q	Q	V	W	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	E	E	T	A	R	N	L	Q	G	Q	N	D	N	R	N	Q	I	I	Q	V	R	G	N	L	D	F	V	Q	P	P	R	L	E	E	T	F	C	S	L	R	L	K	E	N	I	G	N	P	E	R	A	D	I	F	S	P	R	A	G	R	I	S	T	L	N	S	H	N	L	P	I	L	R	F	L	R	L	S	A
Template Known Secondary structure							T	G	G	G		S	S			S		S					S	S	S			S	S							S	S	G	G	G									S	G	G	G		S				T	T	T							S	T	T	T		G	G	G	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180		.	.	.	.	.	.	.	.	.	190	.	.						.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.		.	.	.	.	.	.	.	.	230
Predicted Secondary structure																					.													.	.	.	.	.																														.
Query SS confidence																					.													.	.	.	.	.																														.
Query Sequence		H	H	I	V	L	D	K	G	E	S	A	N	F	Q	L	H	G	P	R	.	A	Y	L	Q	S	I	H	G	K	F	H	A	.	.	.	.	.	L	T	H	H	E	E	K	A	A	L	T	C	G	D	G	A	F	I	R	D	E	A	N	I	T	L	V	A	D	.	S	P	L	R	A	L	L	I	D
Query Conservation																					.													.	.	.	.	.																														.
Alig confidence																					.													.	.	.	.	.																														.
Template Conservation
Template Sequence		E	R	G	F	F	Y	R	N	G	I	Y	S	P	H	W	N	V	N	A	H	S	V	V	Y	V	I	R	G	N	A	R	V	Q	V	V	N	E	N	G	D	A	I	L	D	Q	E	V	Q	Q	G	Q	L	F	I	V	P	Q	N	H	G	V	I	Q	Q	A	G	N	Q	G	F	E	Y	F	A	F	K
Template Known Secondary structure								T	T									S	S																			T	T	S			S							T	T							T	T
Template Predicted Secondary structure
Template SS confidence
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions