Job Description P42624 Confidence 93.72% Date Thu Jan 5 12:01:54 GMT 2012 Rank 85 Aligned Residues 183 % Identity 17% Template c2e9qA_ PDB info PDB header:plant protein Chain: A: PDB Molecule:11s globulin subunit beta; PDBTitle: recombinant pro-11s globulin of pumpkin Resolution 2.20 Å

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		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.																			.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	N	Q	E	V	L	A	P	G	A	A	F	Q	P	R	T	Y	P	K	V	D	I	L	N	V	I	L	D	G	E	A	E	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	D	S	E	G	N	H	V	Q	A	S	A	G	E	A	L	L	L	S	T	Q	P	G	V	S	Y	S	E	H
Query Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.
Template Conservation																			.																																																								.	.
Template Sequence		M	I	R	H	T	I	R	P	K	G	L	L	L	P	G	F	S	.	N	A	P	K	L	I	F	V	A	Q	G	F	G	I	R	G	I	A	I	P	G	C	A	E	T	Y	Q	T	D	L	R	A	F	K	D	Q	H	Q	K	I	R	P	F	R	E	G	D	L	L	V	V	P	A	G	V	.	.	S	H	W	M	Y
Template Known Secondary structure									T	T									.	S	S																		T	T																								T	T							T	T		.	.
Template Predicted Secondary structure																			.																																																								.	.
Template SS confidence
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.		.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.			.	.	.	140	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.		.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure																								.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	L	S	K	D	K	P	L	T	R	M	Q	L	W	L	D	A	C	P	Q	R	E	.	N	P	L	I	Q	K	L	A	L	N	M	G	K	Q	Q	L	I	A	S	P	E	G	A	M	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																								.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.																					.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.
Template Sequence		N	.	R	G	Q	S	D	L	V	L	I	V	F	A	D	T	R	N	V	A	N	Q	I	D	P	Y	L	R	K	F	Y	L	A	G	R	P	E	Q	V	E	R	G	V	E	E	K	S	G	N	I	F	S	G	F	A	D	E	F	L	E	E	A	F	Q	I	D	G	G	L	V	R	K	L	K	G	E	D	D	E	R
Template Known Secondary structure			.		S	S	S										S	S	S	T	T			S		S	S						S	S	S						S	S	T	T							T	T	T	T	S										T											T	T	T			S
Template Predicted Secondary structure			.
Template SS confidence
		149		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
																																																					152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.		.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	L	Q	L	R	Q	Q	V	W	L	H	H	I	V	L	D	K	G	E	S	A	N	F	Q	L	.	H	G	P
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Template Conservation
Template Sequence		D	R	I	V	Q	V	D	E	D	F	E	V	L	L	P	E	T	I	C	T	L	R	L	K	Q	N	I	G	R	S	E	R	A	D	V	F	N	P	R	G	G	R	I	S	T	A	N	Y	H	T	L	P	I	L	R	Q	V	R	L	S	A	E	R	G	V	L	Y	S	N	A	M	V	A	P	H	Y	T	V	N	S
Template Known Secondary structure		T	T						S	S			T	T	T	T			G	G	G	S							S	T	T	S			S				T	T	T								T	T	T	S	T	T					T										T	T									S	S
Template Predicted Secondary structure
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		180	.	.	.	.	.	.	.	.	.	190	.	.						.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.		.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.																														.
Query SS confidence															.	.	.	.	.																														.
Query Sequence		R	A	Y	L	Q	S	I	H	G	K	F	H	A	.	.	.	.	.	L	T	H	H	E	E	K	A	A	L	T	C	G	D	G	A	F	I	R	D	E	A	N	I	T	L	V	A	D	.	S	P	L	R	A	L	L	I
Query Conservation															.	.	.	.	.																														.
Alig confidence															.	.	.	.	.																														.
Template Conservation
Template Sequence		H	S	V	M	Y	A	T	R	G	N	A	R	V	Q	V	V	D	N	F	G	Q	S	V	F	D	G	E	V	R	E	G	Q	V	L	M	I	P	Q	N	F	V	V	I	K	R	A	S	D	R	G	F	E	W	I	A	F
Template Known Secondary structure																			T	T	S										T	T							T	T
Template Predicted Secondary structure
Template SS confidence
		344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions