Job Description P42624 Confidence 96.66% Date Thu Jan 5 12:01:54 GMT 2012 Rank 58 Aligned Residues 195 % Identity 15% Template c2d5fB_ PDB info PDB header:plant protein Chain: B: PDB Molecule:glycinin a3b4 subunit; PDBTitle: crystal structure of recombinant soybean proglycinin a3b4 subunit, its2 comparison with mature glycinin a3b4 subunit, responsible for hexamer3 assembly Resolution 1.90 Å

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		28	.	30	.	.	.	.						.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.																		.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	Y	F	D	P	K	L	.	.	.	.	.	L	G	Y	A	S	L	R	V	L	N	Q	E	V	L	A	P	G	A	A	F	Q	P	R	T	Y	P	K	V	D	I	L	N	V	I	L	D	G	E	A	E	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	D	S	E	G	N	H	V	Q	A
Query Conservation									.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.										.	.	.	.											.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.											.
Template Sequence		E	T	W	N	S	Q	H	P	E	L	Q	C	A	G	V	T	V	S	K	R	T	.	.	.	.	L	N	R	N	G	L	H	L	P	S	.	Y	S	P	Y	P	Q	M	I	I	V	V	Q	G	K	G	A	I	G	F	A	F	P	G	C	P	E	T	F	E	K	P	Q	Q	L	Q	D	S	H	Q	K	I	R	H	F
Template Known Secondary structure						T	T	S							T								.	.	.	.			T	T							.			S	S																		T	T																S
Template Predicted Secondary structure																							.	.	.	.											.
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.					.	.	.	.	.	.	.	.	60	.		.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure																																				.																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	A	G	E	A	L	L	L	S	T	Q	P	G	V	S	Y	S	E	H	N	L	S	K	D	K	P	L	T	R	M	Q	L	W	L	.	D	A	C	P	Q	R	E	N	P	L	I	Q	K	L	A	L	N	M	G	K	Q	Q	L	I	A	S	P	E	G	A	M	G	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																				.																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.							.														.																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.							.
Template Sequence		N	E	G	D	V	L	V	I	P	P	G	V	.	.	P	Y	W	T	Y	N	.	T	G	D	E	P	V	V	A	I	S	L	L	D	T	S	N	F	N	N	Q	L	D	Q	N	P	R	V	F	Y	L	A	G	N	P	D	I	E	H	P	E	T	M	Q	E	G	G	S	V	L	S	G	F	S	K	H	F	L	A	Q
Template Known Secondary structure			T	T							T	T		.	.							.		S	S	S										T	T		T	T			S		S	S						S	S	S					S		G	G	G	G						S	G	G	G	S
Template Predicted Secondary structure														.	.							.
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.			130	.	.	.	.	.		.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
																																																																													152	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	L	Q	L	R
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	F	N	T	N	E	D	T	A	E	K	L	R	S	P	D	D	E	R	K	Q	I	V	T	V	E	G	G	L	S	V	I	S	P	K	W	G	V	E	E	N	I	C	T	M	K	L	H	E	N	I	A	R	P	S	R	A	D	F	Y	N	P	K	A	G	R	I	S	T	L	N	S	L	T	L	P	A	L	R	Q
Template Known Secondary structure			T	T									T	T		S	S			S		S					T	T							S				T	T	T	T	G	G	G										G	G	G		S				T	T	T							S	T	T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180		.	.	.	.	.	.	.	.	.	190	.	.					.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.		.	.	.	.	.	.	.	.	230
Predicted Secondary structure																										.													.	.	.	.																														.
Query SS confidence																										.													.	.	.	.																														.
Query Sequence		Q	Q	V	W	L	H	H	I	V	L	D	K	G	E	S	A	N	F	Q	L	H	G	P	R	.	A	Y	L	Q	S	I	H	G	K	F	H	A	.	.	.	.	L	T	H	H	E	E	K	A	A	L	T	C	G	D	G	A	F	I	R	D	E	A	N	I	T	L	V	A	D	.	S	P	L	R	A	L	L	I	D
Query Conservation																										.													.	.	.	.																														.
Alig confidence																										.													.	.	.	.																														.
Template Conservation
Template Sequence		F	G	L	S	A	Q	Y	V	V	L	Y	R	N	G	I	Y	S	P	H	W	N	L	N	A	N	S	V	I	Y	V	T	R	G	K	G	R	V	R	V	V	N	Q	G	N	A	V	F	D	G	E	L	R	R	G	Q	L	L	V	V	P	Q	N	F	V	V	A	E	Q	G	G	E	Q	G	L	E	Y	V	V	F	K
Template Known Secondary structure			T										T	T									S	S																														T	T							T	T
Template Predicted Secondary structure
Template SS confidence
		365	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions