Job Description P42624 Confidence 97.43% Date Thu Jan 5 12:01:54 GMT 2012 Rank 41 Aligned Residues 195 % Identity 17% Template c1fxzC_ PDB info PDB header:plant protein Chain: C: PDB Molecule:glycinin g1; PDBTitle: crystal structure of soybean proglycinin a1ab1b homotrimer Resolution 2.80 Å

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		28	.	30	.	.	.	.	.	.	.	.						.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.									.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure													.	.	.	.	.																																						.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.																																						.	.	.	.	.	.	.	.
Query Sequence		H	Y	F	D	P	K	L	L	G	Y	A	.	.	.	.	.	S	L	R	V	L	N	Q	E	V	L	A	P	G	A	A	F	Q	P	R	T	Y	P	K	V	D	I	L	N	V	I	L	D	G	E	A	E	Y	.	.	.	.	.	.	.	.	R	D	S	E	G	N	H	V	Q	A	S	A	G	E	A	L	L	L	S
Query Conservation													.	.	.	.	.																																						.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.						.	.	.	.											.																		.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.											.
Template Sequence		E	T	W	N	P	N	N	K	P	F	Q	C	A	G	V	A	L	S	R	C	T	.	.	.	.	L	N	R	N	A	L	R	R	P	S	.	Y	T	N	G	P	Q	E	I	Y	I	Q	Q	G	K	G	I	F	G	M	I	Y	P	G	C	P	S	T	R	H	Q	K	I	Y	N	F	R	E	G	D	L	I	A	V	P
Template Known Secondary structure						T	T	S							T								.	.	.	.			T	T							.			S	S																		S	S														T	T
Template Predicted Secondary structure																							.	.	.	.											.
Template SS confidence
		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.					.	.	.	.	.	60	.	.	.	.		.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.		.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.										.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure																																	.																	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																	.																	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	Q	P	G	V	S	Y	S	E	H	N	L	S	K	D	K	P	L	T	R	M	Q	L	W	L	D	A	C	P	Q	R	.	E	N	P	L	I	Q	K	L	A	L	N	M	G	K	Q	Q	.	.	.	.	.	.	.	.	.	L	I	A	S	P	E	G	A	M	G	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																	.																	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.							.																				.																	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.							.
Template Sequence		T	G	V	.	.	A	W	W	M	Y	N	.	N	E	D	T	P	V	V	A	V	S	I	I	D	T	N	S	L	E	N	Q	L	D	Q	M	P	R	R	F	Y	L	A	G	N	Q	E	Q	E	F	L	K	Y	Q	Q	G	G	S	I	L	S	G	F	T	L	E	F	L	E	H	A	F	S	V	D	K	Q	I	A	K
Template Known Secondary structure		T	T		.	.							.		S	S	S										T	T	S	T	T			S		S	S						S	S	S	S				T	T									S	S	T	T	S										T
Template Predicted Secondary structure					.	.							.
Template SS confidence
		127	.	.			130	.	.	.	.	.		.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
																																																									152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	L	Q	L	R	Q	Q	V	W	L	H	H	I	V	L	D	K	G	E	S	A	N	F	Q	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	L	Q	G	E	K	G	A	I	V	T	V	K	G	G	L	S	V	I	K	P	I	C	T	M	R	L	R	H	N	I	G	Q	T	S	S	P	D	I	Y	N	P	Q	A	G	S	V	T	T	A	T	S	L	D	F	P	A	L	S	W	L	R	L	S	A	E	F	G	S	L	R	K	N	A	M	F	V	P	H	Y
Template Known Secondary structure				S					S					S	S										S								S	S		S			S				T	T	T								T	T	T		T	T					T										T	T
Template Predicted Secondary structure
Template SS confidence
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
			177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.						.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.		.	.	.	.	.	.	.	.	230
Predicted Secondary structure		.																	.	.	.	.	.																														.
Query SS confidence		.																	.	.	.	.	.																														.
Query Sequence		.	H	G	P	R	A	Y	L	Q	S	I	H	G	K	F	H	A	.	.	.	.	.	L	T	H	H	E	E	K	A	A	L	T	C	G	D	G	A	F	I	R	D	E	A	N	I	T	L	V	A	D	.	S	P	L	R	A	L	L	I	D
Query Conservation		.																	.	.	.	.	.																														.
Alig confidence		.																	.	.	.	.	.																														.
Template Conservation
Template Sequence		N	L	N	A	N	S	I	I	Y	A	L	N	G	R	A	L	I	Q	V	V	N	C	N	G	E	R	V	F	D	G	E	L	Q	E	G	R	V	L	I	V	P	Q	N	F	V	V	A	A	R	S	Q	S	D	N	F	E	Y	V	S	F	K
Template Known Secondary structure			S	S										S									T	T	S										T	T							S	S									S	S
Template Predicted Secondary structure
Template SS confidence
		356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions