Job Description P0AAG5 Confidence 97.39% Date Thu Jan 5 11:12:52 GMT 2012 Rank 95 Aligned Residues 194 % Identity 17% Template c3qkuB_ PDB info PDB header:replication Chain: B: PDB Molecule:dna double-strand break repair rad50 atpase; PDBTitle: mre11 rad50 binding domain in complex with rad50 and amp-pnp Resolution 3.30 Å

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		357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	K	N	I	N	L	S	V	P	S	R	N	F	V	A	L	V	G	H	T	G	S	G	K	S	T	L	A	S	L	L	M	G	Y	Y	P	L	T	E	G	E	I	R	L	D	G	R	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.
Template Sequence		H	S	D	T	V	V	E	F	K	E	G	.	I	N	L	I	I	G	Q	N	G	S	G	K	S	S	L	L	D	A	I	L	V	G	L	Y	W	P	L	R	I	K	D	I	K	K	D	E	F	T	K	V	G	A	R	D	T	Y	I	D	L	I	F	E	K	D	G	T	K	Y	R	I	T	R	R	F	L	K	G	Y
Template Known Secondary structure											S		.								T	T	S	S														S	S				T	T			T	T	T	T	B		T	T													S	S											T	T
Template Predicted Secondary structure													.
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.		.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
																																405	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.				.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	S	S	L	S	H	S	A	L	R	Q	G	V	A	M	V	Q	Q	D	P	V	.	.	.	V	L	A	D	T	F	L	A	N	V	T	L	G	R	D	I	S	E	E	R	V	W	Q	A	L	E
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Template Conservation
Template Sequence		S	S	G	E	I	H	A	M	K	R	L	V	G	N	E	W	K	H	V	T	E	P	S	S	K	A	I	S	A	F	M	E	K	L	I	P	Y	N	I	F	L	N	A	I	Y	I	R	Q	G	Q	I	D	A	I	L	E	S	D	E	A	R	E	K	V	V	R	E	V	L	A	A	L	S	K	I	G	E	L	A	S
Template Known Secondary structure		S	S											T	T						S		S	S												S								T	T				T	T		S	S	T	T	S	S															T
Template Predicted Secondary structure
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		452	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.														.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.							.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.
Query Sequence		T	V	Q	L	A	E	L	A	R	S	M	S	D	G	I	Y	T	P	L	G	E	Q	G	N	N	L	.	.	.	.	.	.	.	.	.	.	.	.	.	S	V	G	Q	K	Q	L	L	A	L	A	R	V	L	V	E	.	.	.	.	.	.	T	P	Q	I	L	I	L	D	E	A	T	A	S	I	D	S	G	T	E
Query Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.
Template Conservation
Template Sequence		E	I	F	A	E	F	T	E	G	K	Y	S	E	V	V	V	R	A	E	E	N	K	V	R	L	F	V	V	W	E	G	K	E	R	P	L	T	F	L	S	G	G	E	R	I	A	L	G	L	A	F	R	L	A	M	S	L	Y	L	A	G	E	I	S	L	L	I	L	D	E	P	T	P	Y	L	D	E	E	R	R
Template Known Secondary structure									T	T	S	S									S	S									T	T					G	G	G	S																				S	T	T	T	T						S				S	S
Template Predicted Secondary structure
Template SS confidence
		754	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.
		513	.	.	.	.	.	.	520	.	.	.	.	.	.		.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.			.	.	.	.	.	.	.	550	.
Predicted Secondary structure																.																	.	.
Query SS confidence																.																	.	.
Query Sequence		Q	A	I	Q	H	A	L	A	A	V	R	E	H	T	.	T	L	V	V	I	A	H	R	L	S	T	I	V	D	A	D	.	.	T	I	L	V	L	H	R	G	Q
Query Conservation																.																	.	.
Alig confidence																.																	.	.
Template Conservation
Template Sequence		R	K	L	I	T	I	M	E	R	Y	L	K	K	I	P	Q	V	I	L	V	S	H	D	E	E	L	K	D	A	A	D	H	V	I	R	I	S	L	E	N	G	S
Template Known Secondary structure											T	T	T	S	S	S							S		S	G	G	G	G	T		S	B								T	T
Template Predicted Secondary structure
Template SS confidence
		834	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions